Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0839 ATGTCAAGTGAAGCAACACACTGGTGTCATACATGCGAGCAGCCAATCATGCCTGAAGGGAGAGGTGCCATTTGCCCTCACTGTGATGGATGCTTTGTGGAAGAACTCGAGGTGATAGGACTATTACATCGATATGGCTCTCCATCACAATTTGAAGAGTTTCACCAGATGCCTGACAATTTTGATGCTACGCAAGCTACAGATGATGTAGATAATTTCATGAGGCGGCAAATTGCTGAAAGCGAAAGGTACCCAACTGTTGATGTTAGAGGGAGGTCTGGTGACTCTGGTGATCAGTTGGGCTACTTTACAGACAATGAAGTGCAAGAACTTATTCAACAACTCTCTATGAATGATGATATCAATAGGACAAGTGTTCCGCCACCTGCACCAAGTTCTTCAATTAATTCCCTGCCTACTATCAAGATCACGCGGTCACACCTTAGCTCTGATTCAGAGTGTTCAGTTTGTAAAGAAACATTTGAACTAGGCTCTGAGGCCAAGGCAATGCCATGTAACCATATTTACCACTCGGACTGTATTGATCGTTGGTTAACTCGAGCTAACTCATGCCCTGTCTGCCGTGTTGAGCTGCCACCTCCAGGACACACTACTCCTGGAAGTCGAAGTTCTGGAGGAAGGAATGCCAGCAGCAGTGGCAACCGTGGTGCCTCACGCGGTAGAGAGAATAGCCAGCGGAACCGTCGGGGCAAAAATCCATTTTCATTTTTGTGGCCATTCCGTCGGTCAAGATCAAGCCATAATCATTAG 771 0.4656 MSSEATHWCHTCEQPIMPEGRGAICPHCDGCFVEELEVIGLLHRYGSPSQFEEFHQMPDNFDATQATDDVDNFMRRQIAESERYPTVDVRGRSGDSGDQLGYFTDNEVQELIQQLSMNDDINRTSVPPPAPSSSINSLPTIKITRSHLSSDSECSVCKETFELGSEAKAMPCNHIYHSDCIDRWLTRANSCPVCRVELPPPGHTTPGSRSSGGRNASSSGNRGASRGRENSQRNRRGKNPFSFLWPFRRSRSSHNH* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0839 256 Pfam Ring finger domain 153 195 IPR001841 -
Dod04g0839 256 SUPERFAMILY RING/U-box 134 201 - -
Dod04g0839 256 MobiDBLite consensus disorder prediction 204 227 - -
Dod04g0839 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 95 - -
Dod04g0839 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 256 - -
Dod04g0839 256 SMART ring_2 154 194 IPR001841 -
Dod04g0839 256 MobiDBLite consensus disorder prediction 197 256 - -
Dod04g0839 256 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Dod04g0839 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 202 IPR013083 -
Dod04g0839 256 PANTHER OS03G0351800 PROTEIN 99 256 - -
Dod04g0839 256 PANTHER OS03G0351800 PROTEIN 2 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0839 Dod-Chr4 17897468 17898238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0839 98 248 C3H Transcription Factor Family AT1G68180 33.113 1.30e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0839 K11982 - gmx:100813674 249.595