Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0829 ATGGTGGTGTCATTGGGCGATCCTTTTACCACTGTCACAGATGTTTGGCTGAGCGGAGCCAACGAGTTTCAGTTGAACGATTGTGAGAGAGTTAGAGAAGCACGTAGTCACGGGATCCGTACTCTCGTGTTTATTTCCACAGCAAACGGTGTCGTTGAGGTTGGTTCGCCTGACGTGCTCGGCCTTGATCACGGCCTCTTGCAAATGGCCAAATCAGTTTTTGACAATCACCAATCCCCCCTCTTCGATCCCAAAGTTCCCATTTTGGGCCTTCCCGGAAGAGAGATCAACAAAGACAAGCAACAAGAGAGAGCGGAGATAAATGATGAAGCGCCTGCAACTGCGAAGGTAGGGGGTGATGGATCTTCGTCTGACCCATCAGGACCTTCTGACACCGACGTTCGGTCTGCCGATGCCAAAACCAGCAGCCTTCCGATGGAGATGAGAGGGCGACGGAGAAGGCAGGAGATGACGCTTCATCAACCAAATAACGTGGTGGCCGAGAGGCAGAGACGGGAAAGGCTGAACCAGAGATTCTATGCTCTGCGTTCTGCAGTCCCGAACGTGTCCAAGATGGACAAAGCTTCCCTTCTTTCCGACGCGGTTGCTTACATCGATAAACTCAAGGCCAGAATCAAGGAGCTGGAGGCCATGCTAGAGAACCAGAACCCTACCATGAGATCCAAGCTGGAAACTGATTCGGAGCATAACAAAGCCTTAGCCACTCATTCATCAAGTTGTGCTTCCACTAATGTGGGAGTTGAAGTGAAGATATTTGGGACTGAGGCAATAATAAGGGTCCAGAGTGTAAATGTGAATCACCCGCCTGCAAGGTTGATGGATGCTCTCAGAGATCTCCATTTGCAAGTTCTCCACGCGTCCATTTCAAACATCAAGGAGATGATGCTACAAGACGTTGTGATCAGGGTTCCCAGTGATCTCATGACCGAAGAAGCAATGAAAGATGCCATTGTCCAAAGACTGCAAAATAATAATTTTAGAATTTCAGTGTCTTAG 1017 0.4907 MVVSLGDPFTTVTDVWLSGANEFQLNDCERVREARSHGIRTLVFISTANGVVEVGSPDVLGLDHGLLQMAKSVFDNHQSPLFDPKVPILGLPGREINKDKQQERAEINDEAPATAKVGGDGSSSDPSGPSDTDVRSADAKTSSLPMEMRGRRRRQEMTLHQPNNVVAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVAYIDKLKARIKELEAMLENQNPTMRSKLETDSEHNKALATHSSSCASTNVGVEVKIFGTEAIIRVQSVNVNHPPARLMDALRDLHLQVLHASISNIKEMMLQDVVIRVPSDLMTEEAMKDAIVQRLQNNNFRISVS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0829 338 MobiDBLite consensus disorder prediction 100 159 - -
Dod04g0829 338 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 5 329 - -
Dod04g0829 338 PANTHER MYC 5 329 IPR045084 GO:0003700|GO:0006355
Dod04g0829 338 Pfam Helix-loop-helix DNA-binding domain 166 208 IPR011598 GO:0046983
Dod04g0829 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 224 IPR036638 GO:0046983
Dod04g0829 338 MobiDBLite consensus disorder prediction 120 139 - -
Dod04g0829 338 SMART finulus 165 214 IPR011598 GO:0046983
Dod04g0829 338 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 74 IPR025610 -
Dod04g0829 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Dod04g0829 338 Coils Coil 198 225 - -
Dod04g0829 338 Gene3D - 162 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0829 Dod-Chr4 17076895 17077911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0829 15 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.940 1.61e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g0829 bHLH-MYC_N 5.1e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0829 - K13422 pvu:PHAVU_004G090300g 286.189