LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g0818	ATGACAGAGGTGGCGAGCTCAGTGGTCCATGAGGTATTGGGACAAAGGATTCTAGACGTGGATCAGCCAATCGTCGATTACATCGTCAACGTACTCGCCGATGACGACTTCGACTTCGGTCTCGACGGCGAAGGAGCCTTCGAAGCTTTCGGAGAACTACTCGTTGCCGCCGGCTGCGTCGACGATTTCTCCGAGTGTCGCTCCGTATGTGGCAAGCTGTCTGAGAAGTTTGGGAAGCATGGTTTGGTGAAGGCGAAGCCAACAGTGCGAAGTCTTGCGGTGCCGTTTAGAATGAATGAGGGAATGGATGAGGGGGCAGCCCCCAAGAAGAAGCCTGAGGCTGTTGACGGCCCTTTGCTGTCGGAACGCGACCGCTTAAAGCTGGAAAGGAGAAAGAGGAAGGAGGAACGCCAGAGAGAGGCACAATACCAAATGCATTTGGCAGAGATGGAAGCGGCGCGGGCAGGGATGCCTGTTGCATGTGTTAGGCATGATGGTAGTGGTGGTTCGGCTGTGAAGGACATTCACATGGAGAACTTCAATATTTCTGTTGGTGGTCGCGACCTCATTGTGGATGGTTCAGTCACACTTTCTTTTGGAAGGCATTATGGCCTTGTTGGAAGAAATGGTACAGGCAAAACTACTTTCCTCAGGCACATGGCTATGCATGCCATTGATGGTATTCCGAGGAATTGTCAGATATTGCATGTGGAACAAGAGGTCGTCGGTGATGATACGACTGCCTTGCAGTGTGTTCTCAATTCCGACATTGAAAGATGTCAGCTTCTGGAGGAAGAAACTCAGTTACTTGCCCAGCAGAGGGAATACGAGGACAAAATTGGAAAGAGCAATGATAATATGAACGGAGTGGTTGTTAGAGATGGTATTTCGCAAAGGCTTGAGGAAATATACAAGAGGCTTGAGTTAATTGATGCTTATTCTGCAGAGTCACGGGCAGCATCCATACTTGCAGGTCTAAGTTTCTCTCCTGAGATGCAGAAGAGAGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAACCTGATATGTTACTTCTTGATGAGCCTACGAACCATCTTGATCTTCATGCTGTCTTGTGGCTTGAGTCATACTTGGTTAAATGGCCAAAAACATTTATCGTGGTTTCTCATGCCAGAGAATTTTTAAATACGGTGGTTACTGATATAATTCACTTACAAGGCCAGAAGCTGACTACTTATAAAGGGAATTATGATATTTTTGAGAAGACACGAGAAGAACAAATTAAAAACCAGCAAAAGGCAGTAGAGGCAAATGAACGTGCAAGATCTCATATGCAGTCCTTCATTGACAAGTTCCGCTATAATGCCAAGAGGGCATCACTTGTCCAATCGAGAATCAAGGCTTTGGAACGAATGGGCCATGTAGATGAAATTGTTAACGATCCTGACTACAAATTTGAGTTCCCCACTCCAGATGATAGACCTGGCCCACCCATAATAAGTTTCAGTGATGCATCATTTGGTTATCCCGGGGGACCCATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGAATTGGCAAATCAACTATACTTAAATTAATTGCCGGGGATCTACATCCTACTTCTGGAACTGTTTTCCGATCTGCTAAGGTTCGTATAGCAGTTTTCAGTCAGCATCATGTTGATGGACTGGACTTATCTTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTGCCGGAGCAGAAGCTTCGAGCTCACTTGGGTTCTTTTGGTGTAACGGGAAATCTTGCACTTCAACCGATGTATACTTTGTCAGGTGGTCAGAAAAGCAGAGTTGCATTTGCTAAGATAACTTTCAAGAAGCCACATATAATTTTACTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTCGTGTTGTTCCAAGGAGGCATTCTTATGGTGAGTCACGATGAGCACCTCATATCTGGAAGTGTGGAGGAGCTATGGGTTGTATCCCAAGGAAAAGTGATGCCATTCCAGGGCACCTTCCAAGATTACAAGAAGATACTCCAGTCATCTTAG	2145	0.4564	MTEVASSVVHEVLGQRILDVDQPIVDYIVNVLADDDFDFGLDGEGAFEAFGELLVAAGCVDDFSECRSVCGKLSEKFGKHGLVKAKPTVRSLAVPFRMNEGMDEGAAPKKKPEAVDGPLLSERDRLKLERRKRKEERQREAQYQMHLAEMEAARAGMPVACVRHDGSGGSAVKDIHMENFNISVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTTALQCVLNSDIERCQLLEEETQLLAQQREYEDKIGKSNDNMNGVVVRDGISQRLEEIYKRLELIDAYSAESRAASILAGLSFSPEMQKRATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQGQKLTTYKGNYDIFEKTREEQIKNQQKAVEANERARSHMQSFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGDLHPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSQGKVMPFQGTFQDYKKILQSS*	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g0818	714	ProSitePatterns	ABC transporters family signature.	623	637	IPR017871	GO:0005524
	Dod04g0818	714	CDD	ABCF_EF-3	504	696	-	-
	Dod04g0818	714	Pfam	ABC transporter	521	651	IPR003439	GO:0005524
	Dod04g0818	714	MobiDBLite	consensus disorder prediction	103	122	-	-
	Dod04g0818	714	PANTHER	NON-TRANSPORTER ABC PROTEIN	121	713	-	-
	Dod04g0818	714	Pfam	ABC transporter	407	487	IPR032781	-
	Dod04g0818	714	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	504	713	IPR003439	GO:0005524
	Dod04g0818	714	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	121	713	-	-
	Dod04g0818	714	SMART	AAA_5	199	414	IPR003593	-
	Dod04g0818	714	SMART	AAA_5	529	696	IPR003593	-
	Dod04g0818	714	CDD	ABCF_EF-3	175	413	-	-
	Dod04g0818	714	Gene3D	-	466	714	IPR027417	-
	Dod04g0818	714	Gene3D	-	160	449	IPR027417	-
	Dod04g0818	714	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	175	436	IPR003439	GO:0005524
	Dod04g0818	714	ProSitePatterns	ABC transporters family signature.	340	354	IPR017871	GO:0005524
	Dod04g0818	714	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	440	IPR027417	-
	Dod04g0818	714	MobiDBLite	consensus disorder prediction	101	122	-	-
	Dod04g0818	714	Pfam	ABC transporter	194	368	IPR003439	GO:0005524
	Dod04g0818	714	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	485	706	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g0818	Dod-Chr4	16579236	16600208	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g0818	460	665	Calmodulin-binding Proteins	AT2G36910	25.926	5.80e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g0818	K06158		-	gmx:547980	1260.74