Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0796 ATGCCCCGAGCCAGACCCACCGATCCATCAACCAAACGATCATCACTAAACCCTAACGAGCCCGCCAACCAGACCCGGTTCCGCGGCGTCCGGAAGCGACCATGGGGCCGGTTCGCCGCCGAGATCAGAGATCCGTGGAAGAAATCGCGGGTCTGGCTCGGCACCTTCGACACAGCGGAGGCCGCCGCCCGCGCCTACGACGCTGCTGCCCGCTCCTTCCGCGGGCCGAAGGCCAAGACCAACTTCCCCTTGCCAGGCCCCGAGCCCGGTTCGGATCTTGGGTTTTCCAAGTTTGATCCGGTCCAGGCGAGCCGGCCCACCAGCAGCGGCATGAGCAGCACCGTCGAGTCTTTCAGCGGACCTAGGGTTTCTAACCCCGTCCCGACGGTCTACCGCAGGCCCCTGAACCCTGTCGCACTCGATGATTGCCACAGCGATTGCGATTCCTCCTCCTCTGTGGTCGACGACGATGAAGACTGCGTCCTCACCTCTTCCTTTCGCCGCAAGACGCTGCCCTTCGATCTCAACCTTCCCCCGCCGGAGACTGATGACGCCGCCGCCGGAGATCCCGCCGCCGATGAGCTCCGAGTCACTGCTTTGCGCCTCTGA 609 0.6453 MPRARPTDPSTKRSSLNPNEPANQTRFRGVRKRPWGRFAAEIRDPWKKSRVWLGTFDTAEAAARAYDAAARSFRGPKAKTNFPLPGPEPGSDLGFSKFDPVQASRPTSSGMSSTVESFSGPRVSNPVPTVYRRPLNPVALDDCHSDCDSSSSVVDDDEDCVLTSSFRRKTLPFDLNLPPPETDDAAAGDPAADELRVTALRL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0796 202 MobiDBLite consensus disorder prediction 8 24 - -
Dod04g0796 202 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Dod04g0796 202 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Dod04g0796 202 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Dod04g0796 202 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 177 - -
Dod04g0796 202 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Dod04g0796 202 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Dod04g0796 202 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Dod04g0796 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 21 177 - -
Dod04g0796 202 MobiDBLite consensus disorder prediction 101 122 - -
Dod04g0796 202 MobiDBLite consensus disorder prediction 1 34 - -
Dod04g0796 202 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Dod04g0796 202 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Dod04g0796 202 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0796 Dod-Chr4 15346906 15348290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0796 19 202 AP2-EREBP Transcription Factor Family AT1G50640 50.718 2.49e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g0796 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0796 K09286 - fve:101297464 200.29