Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0787 ATGAACAACTTTGTTCCTGGTTGGAATTTTGAGAGTGATACCACTTTTGACACCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAACTTGTGGAGCTCCTATGGCAAAATGGGCAGGTAGTATTGAACAGCCAAACGCATCGGAAACCGTTTGCGAATTCGATCGAATCGCGGCTGGTTCAGAAAAACTTTCAATCACCATTGAGGACTAGTGAGCCATTTGGGAATTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTATTGAGGACCAATTCGAGCAAGAATTGTGCTCAAACCTTTTACCTGAACTTCCACTTTCTGAAGCTACGTCTTATAGGCAAATCAGGCAATTTGAAGAGGGAAAGTTTTCCAAATTGGATGCTTCTAGATCTGCCAATGTGGCTGCAAGTTCACAATCACCAAATATGAAACCTTCCTCATGTGTTCAGGAATTCTCAGGAGTTCATATGCCTGCTCCAAGATTCCATGCTTCTGAATCCTCAGAGAAAACCAATGAATTTGGTGGATCAAACAAGGTCCTGAACTTCTCTCACTTTTCAGCACCCCCTAATGTTTCTTCAGCATCTGCTAATGCAAATGTTAGAGGCAAAGTTGCCGGTGATCCGTCGAAAAGTGAGGTTAGAGAGTGCTCAGGGATGACCGTTGGTTCCAGTTACTGTGGCAGCAATCACATACCTCAAGACCAATATGTGAGCAGGGCATCAAGCAATGGTGCCTGGGCTACTACTTTATTTGCTGAGCCTGACGCTTTTAGGGACGATGTCCAGAGAACAGTTCCTTCGAGTGATAAAGGAAAATCAGAGATGCTTGAACCAAATATGACATCATCTTCTGGGGGTTCAGAGAGTAGCCTTGGAAAAACTTGTTCCCTATCTACAAGAAACCATGGACAGAAAAGGAAAGGCATAGATGCTGAAGAATCAGAGGAACAAAGTGAGGACACAGAACTCAAATCAGCTGTTGGAAACAAGGCATCTAAACGAGCAGGGTCTTCCCGGAGGAACCGTGCTGCTGAAGTGCATAATCTGTCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTACAGGTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCACATTATATGTCACAAATGGGTATGGGAATGGCTGCACCTTCTTTTCCTCCTATTCACAATCCGATGCAATTACCAAGAGTGCCACTTGATCAATCGCTATCTGTTTCTCAGACACCAAACCAATCATTAATGTGCCAAAATCCTATTTTGGGTGCCTTTAATTACCAGAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTGTCATCTCATGCAAAGTTCCCCTCAGCAAATGAATGCTTTCAGATTTGGTTCCCAGGCAGTGCAACATAGTCAAACAATGATTCCAGCAAGCAATGGCAGTGGACCCGTGAGTGTAGCAGCTAATATTGATGATGTTGTGAGTGGCAAAATGGGTTAA 1629 0.4359 MNNFVPGWNFESDTTFDTNQKKPMGPDQELVELLWQNGQVVLNSQTHRKPFANSIESRLVQKNFQSPLRTSEPFGNSSNLIQDDETVSWIQYPIEDQFEQELCSNLLPELPLSEATSYRQIRQFEEGKFSKLDASRSANVAASSQSPNMKPSSCVQEFSGVHMPAPRFHASESSEKTNEFGGSNKVLNFSHFSAPPNVSSASANANVRGKVAGDPSKSEVRECSGMTVGSSYCGSNHIPQDQYVSRASSNGAWATTLFAEPDAFRDDVQRTVPSSDKGKSEMLEPNMTSSSGGSESSLGKTCSLSTRNHGQKRKGIDAEESEEQSEDTELKSAVGNKASKRAGSSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPMMFPHYMSQMGMGMAAPSFPPIHNPMQLPRVPLDQSLSVSQTPNQSLMCQNPILGAFNYQNQMQNPALSEQYARYMGCHLMQSSPQQMNAFRFGSQAVQHSQTMIPASNGSGPVSVAANIDDVVSGKMG* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0787 542 SMART finulus 355 404 IPR011598 GO:0046983
Dod04g0787 542 MobiDBLite consensus disorder prediction 281 309 - -
Dod04g0787 542 Gene3D - 344 405 IPR036638 GO:0046983
Dod04g0787 542 MobiDBLite consensus disorder prediction 264 363 - -
Dod04g0787 542 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 524 IPR031066 -
Dod04g0787 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983
Dod04g0787 542 CDD bHLH_AtPIF_like 349 412 - -
Dod04g0787 542 PANTHER TRANSCRIPTION FACTOR PIF5 1 524 - -
Dod04g0787 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Dod04g0787 542 MobiDBLite consensus disorder prediction 345 363 - -
Dod04g0787 542 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0787 Dod-Chr4 14930429 14934228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0787 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 40.741 4.95e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g0787 HLH 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0787 K16189 - gmx:100784531 792.727