Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0783 ATGTCCTCTTGGTTCAGTTCCTCTTCGCCTGGTTCGATACCGATGACGGTGACGAACACGCCGTCGCAGGACCTTGCCCTCACGAACCTTGCTTTCTGTTCCCCCTCCGATCTCCGCAACTTCGCTGTCCCCGGCCACTCTGCACTCTACCTCGCCACCGTTGGCGATTCCTTCGTCATGAAAGCATACGCAGCGGCCAGATTGCCCTCAATTCCATTCAACGTCGATGTGTTAAAGTCTCTGCTGCTGAATCGATACCTGTCACCAAGTAAGTCTTTTTTTTATTGGTTTGTGCCTTCTGAGAAGTTCAACCTGGCATTGCTAACCCTTGAACTGGACTTCGTTAAAAAGGGAAGTAAGAGTGAACAGATTGATGCTGTTCTACTTGCTAAGCAACTTAGGAAGAGATTTGCGAACCAGGTTATGACAGCAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAACTTTACAGTCACTCAAGCTGCTGTTGAAGGCGAAGAAAAGTCCAATGCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTTGAAACATCGCGTGATAGTGGAATTAAGATTGTTAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTCAATCTTCAGTCTCTGGGTATTGGGGGCTTGACTGCAGAGTTTGCAGATATATTTAGAAGAGCCTTCGCCTCCCGTGTTTTCCCTCCCCATGTGACATCCAAATTGGGGATCAAGCATGTGAAGGGCATGCTGCTTCATGGACCTCCTGGAACTGGAAAGACCCTTATGGCACGCTTGATTTTGACAAAATTGAACTTCATTGTTGTAAATGGCCCTGAAGTTTTAAGTAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAGCAGGAGCAGAGGACCCGAGGCGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATCGATGCTATTTGTAAGTCTAGAGGTTCAACTCGCGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATTGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACAAACAGAAAGGACATGCTTGATGAGGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGGTTGCAAATTCTTCAAATTCATACAAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATTTGCTTTAAATCGACAATTGAGTCTAGATGATCTCACTAAGCCAGTGGAGGAAGAGAATATTAAGGTTACTATGGAAGACTTTTTGAATGCACTCCAAGAAGTTACTCCTGCCTTTGGAGCTTCCACTGACGACCTTGAAAAACGCAGACCCTATGGAATGGTGGATTGTGGTGATCGACATAAGCACATTTATCGCAGAGCAATGCTGCTTGTTGAGGAAGTTAAAGGTAGTAAAGAGCTTCCACTTGGTTCTTGTCTTCTGGAAGGTTCCAGTGGCAGTGGTAAAACCGCACTGGCAGCTACTGTTGGTATTGACAGCGACTTTCCGTATGTCAAGATAGTATCGGCTGAATCAATGATGGGTCTACACGAGAGCACTAAATGTGCACAGCTTGTTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTTATTATCCTTGATGACATTGAGAGGTTGTTGGAGTATGCTTCCATTGGCCCGCGGTTTTCAAACTTGATTATGCAGACACTATTGCTCCTGCTCAAACGGGTTCCTCCAAAGGGCAAAAGACTTATAGTTATAGGTACAACAAGTGAACTGTATTTCTTGGACTCAATTGGATTTTCTCGTGCATTCAGTGTCACTTACCATGTTCCTACCTTGAACACAAACGATGCAAAGAAGGTCCTAGAACAGTTGAATCTTTTTGCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGGATGATGTGCCTATTAGTGTGCTGTACACAGTGATTCGGATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAAGCTATCTATTCCGGCAAAAGGAAGATTAATATCTCTCATTTCTATAGTATCGTCCAGGAAGTTCTGGCGATGGTGAACCCAGAACGAAGAGGAGGCTCCACGATGGAAGAGAACGTGCTCGCTGTTGCGTAG 2286 0.4405 MSSWFSSSSPGSIPMTVTNTPSQDLALTNLAFCSPSDLRNFAVPGHSALYLATVGDSFVMKAYAAARLPSIPFNVDVLKSLLLNRYLSPSKSFFYWFVPSEKFNLALLTLELDFVKKGSKSEQIDAVLLAKQLRKRFANQVMTAGQKVLFEYHGNNYNFTVTQAAVEGEEKSNALERGMISDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLTAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLHGPPGTGKTLMARLILTKLNFIVVNGPEVLSKFVGETEKNVRDLFADAEQEQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMEDFLNALQEVTPAFGASTDDLEKRRPYGMVDCGDRHKHIYRRAMLLVEEVKGSKELPLGSCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAESMMGLHESTKCAQLVKVFEDAYKSPLSVIILDDIERLLEYASIGPRFSNLIMQTLLLLLKRVPPKGKRLIVIGTTSELYFLDSIGFSRAFSVTYHVPTLNTNDAKKVLEQLNLFADEDIDSAAEALDDVPISVLYTVIRMAAQGEQGGSAEAIYSGKRKINISHFYSIVQEVLAMVNPERRGGSTMEENVLAVA* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0783 761 SUPERFAMILY Cdc48 domain 2-like 101 203 IPR029067 -
Dod04g0783 761 Pfam AAA+ lid domain 422 477 IPR041569 -
Dod04g0783 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 706 IPR027417 -
Dod04g0783 761 Pfam Cell division protein 48 (CDC48), domain 2 123 187 IPR004201 -
Dod04g0783 761 Pfam ATPase family associated with various cellular activities (AAA) 536 650 IPR003959 GO:0005524|GO:0016887
Dod04g0783 761 Pfam ATPase family associated with various cellular activities (AAA) 258 395 IPR003959 GO:0005524|GO:0016887
Dod04g0783 761 PANTHER VESICULAR-FUSION PROTEIN NSF 96 740 IPR039812 GO:0016887|GO:0035494
Dod04g0783 761 Gene3D - 207 396 IPR027417 -
Dod04g0783 761 PANTHER BNAA03G50350D PROTEIN 13 41 - -
Dod04g0783 761 Gene3D - 100 198 - -
Dod04g0783 761 PANTHER VESICULAR-FUSION PROTEIN NSF 13 41 IPR039812 GO:0016887|GO:0035494
Dod04g0783 761 PANTHER BNAA03G50350D PROTEIN 96 740 - -
Dod04g0783 761 CDD AAA 520 658 - -
Dod04g0783 761 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Dod04g0783 761 Gene3D - 397 489 - -
Dod04g0783 761 CDD AAA 256 396 - -
Dod04g0783 761 SUPERFAMILY ADC-like 13 63 IPR009010 -
Dod04g0783 761 Gene3D - 493 664 IPR027417 -
Dod04g0783 761 Gene3D - 13 73 - -
Dod04g0783 761 SMART AAA_5 254 398 IPR003593 -
Dod04g0783 761 SMART AAA_5 531 667 IPR003593 -
Dod04g0783 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 494 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0783 Dod-Chr4 14704246 14714553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0783 159 470 Calmodulin-binding Proteins AT3G56690 29.747 1.11e-32 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0783 K06027 - gmx:100779259 1160.59