Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0780 ATGCACCATTTTCTGATTGCCAGACTAAACACTAGGACCCCCAACGCGGGTGCTGTCTTGCACAATGCTTTCCTTTGCTTCGCTTCACGCACTTTATCTGCATCCAACACAATCCACCACCGCAAAGGTGGCTCCTTTACGGTCTCAAACCTCATCAACTCATGCGGCCTGTCCCCTGACATAGCCCTGAAGCTCTCCAAAAGGCTGCAATCGAAAAATCAAACTGGGCCAAACGCAGTGGTTGATCTTCTCAGGAACTGCGGATTCTCAGATACCCAGTTATCTGTGCTTGTCAGGAAACACCCTTTGGTGCTCCTAGCAAATCCCGAAAAGACCCTTTTGCCTAAACTCAAGTTCCTTCAGTCTGTTGGGGTTTCAGGCACTGACCTTCCTAGAATCCTCATTGGAAACACTTCATTTTTAACTACAAGCTTGGAGAACAGCACTATCCCTCGTTACAAGATCGTTAGGAGCCTAGTTCGCAGCGACGAGGAACTGGTGAAGACTTTGAAGCATGGGACATGGCACTTTCACTCTCCCGAGGTAATAACTGATTCTGCCTCAAACATAGAGGTTTTGAGACAGCTTGGCCTTTCCCAGGGTTCAATTTCTCTCCTGGTAACTAATTTCCCTAGTGTAGTATTCATGAAGCATTCTAGATTCGTTGAGGCGGTTAACGCGACAAAGGAAATGGGGTTCGATCCTTTGAAAACGAATTTTGTTTTGGCACTGCAAGTGCTTGCTAAGATGAGTAGAGCGATGTGGAAATCGAAATTGGAGGTTTTTGAGAGGTGGGGATGGTCCAGAGATGTGTGTCTTTTGGCTTTCAAAAGGTATCCCCAGTGTATGATGCTATCGGAGAAGAAGATTACAAAAACACTGAGCTTCTTGGTGAAGGATAAGGGCTGGCCCTCAGAGGACATTGCTAGATGCCCGGGGATTCTGAACCGCAGCTTGGAGAGGACATTTGTTCCTAGATGTGCAGTTGTTGAGATGTTGAAGTCAAGGGGTTTGGTGAAGAATAACTTGTCCTTGAGTAGCTTTGTTGTGATTAGTGAGAACAAGTTTTTGGAGAGATATGTTACCAAATTTCAGGAAAGTTTGCCTCTATTGATGGATGTGTATAAAGGTAAGAAGTTGGATTGA 1146 0.4555 MHHFLIARLNTRTPNAGAVLHNAFLCFASRTLSASNTIHHRKGGSFTVSNLINSCGLSPDIALKLSKRLQSKNQTGPNAVVDLLRNCGFSDTQLSVLVRKHPLVLLANPEKTLLPKLKFLQSVGVSGTDLPRILIGNTSFLTTSLENSTIPRYKIVRSLVRSDEELVKTLKHGTWHFHSPEVITDSASNIEVLRQLGLSQGSISLLVTNFPSVVFMKHSRFVEAVNATKEMGFDPLKTNFVLALQVLAKMSRAMWKSKLEVFERWGWSRDVCLLAFKRYPQCMMLSEKKITKTLSFLVKDKGWPSEDIARCPGILNRSLERTFVPRCAVVEMLKSRGLVKNNLSLSSFVVISENKFLERYVTKFQESLPLLMDVYKGKKLD* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0780 381 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 SMART mt_12 204 234 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 Pfam mTERF 249 357 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 Pfam mTERF 82 234 IPR003690 GO:0003690|GO:0006355
Dod04g0780 381 Gene3D Transcription termination factor 3, mitochondrial 181 368 IPR038538 -
Dod04g0780 381 Gene3D Transcription termination factor 3, mitochondrial 59 180 IPR038538 -
Dod04g0780 381 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 22 378 - -
Dod04g0780 381 PANTHER CGI-12 PROTEIN-RELATED 22 378 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0780 Dod-Chr4 14519816 14521827 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dod04g0780 mTERF 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0780 K15032 - gmx:106799612 455.677