Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0748 ATGAGGAACCCATCGTCATTGTCAACAACGCAAGCAAGAGCAGCGACGAGTAAGAAGAAGAGTGGTAACAGGGGTGCCGGGAGCAGCGGTACTCCGACTCCATGCTGCAGCAAGGTAGGGCTGAAGAGAGGGCCATGGACGGCGGAAGAGGACGAGGTGCTCGCTGGTTACATCAGGAAAGAAGGAGAAGGCCGGTGGCGGACGCTCCCTAAGAGGGCCGGCCTCCTCCGCTGCGGGAAGAGCTGCCGCCTCCGATGGATGAACTACCTCCGCCCTTCCGTGAAACGCGGCCAGATCGCCCCCGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGAATACCAGGAAGAACCGATAATGAGATCAAGAACTACTGGAACACCCATCTCAGCAAGAAGCTCATAAGCCAAGGGATTGATCCAAGGACCCACAAGCCTCTCAGCGCACCACTTGTTCCCTCTCCTTCCACTACTACTACTACTACCACCCCACCTTCTAATAATCATTCATCCAAAAAATATCTTGCAACAATCCCGGATGGCAATCACCAAAATATTCAAGATCAAGCCATTCCTAATCCTAACAATAATCATCTAATTGTTGATGCAAACCAAGAATTTGATCCCAAGAGCACCACTACACACATGGAGTTGGATCAATATCAACAAGCTCAGCACCTATATGCCAATAATAATGCCTATGATGACAATCTGGATATGGCAGCAGCTGCTGCTGCTGCAACCGATGGTGTTTCTGCAATGGGTTTGATTAAGAGCAATATTGATCATCTACTTACCTCCAACAACGAGGATCATTATGATGATGTGAACTACTGTTCTGATGATGTTTTCTCTTCCTTCCTCAACTCTTTGATCAACGAGGAGGATGCTTTTGCTTCCCAGCACCTCCTGCAATCAGAACCTCCAGATGGGAATCATGGCATTGCATTACCTTCTGATGATGGCCGTGACCCTTTGGTTTCAATCAGCACTCCATCTGCAACCCCAGATTATGGCTTTGGTGCTGCTTGGGATCAACCGCCACCCGTGCCTGCTACTTCCAACAAAAACGACCCCAACATAAAGGGGGTTGACGATGATCACAACAAATAG 1146 0.4991 MRNPSSLSTTQARAATSKKKSGNRGAGSSGTPTPCCSKVGLKRGPWTAEEDEVLAGYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLSAPLVPSPSTTTTTTTPPSNNHSSKKYLATIPDGNHQNIQDQAIPNPNNNHLIVDANQEFDPKSTTTHMELDQYQQAQHLYANNNAYDDNLDMAAAAAAATDGVSAMGLIKSNIDHLLTSNNEDHYDDVNYCSDDVFSSFLNSLINEEDAFASQHLLQSEPPDGNHGIALPSDDGRDPLVSISTPSATPDYGFGAAWDQPPPVPATSNKNDPNIKGVDDDHNK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0748 381 MobiDBLite consensus disorder prediction 1 35 - -
Dod04g0748 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Dod04g0748 381 SMART sant 95 143 IPR001005 -
Dod04g0748 381 SMART sant 42 92 IPR001005 -
Dod04g0748 381 Gene3D - 100 161 - -
Dod04g0748 381 MobiDBLite consensus disorder prediction 161 185 - -
Dod04g0748 381 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Dod04g0748 381 MobiDBLite consensus disorder prediction 1 38 - -
Dod04g0748 381 MobiDBLite consensus disorder prediction 315 381 - -
Dod04g0748 381 Pfam Myb-like DNA-binding domain 100 141 IPR001005 -
Dod04g0748 381 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Dod04g0748 381 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 29 316 - -
Dod04g0748 381 SUPERFAMILY Homeodomain-like 40 137 IPR009057 -
Dod04g0748 381 MobiDBLite consensus disorder prediction 151 185 - -
Dod04g0748 381 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 29 316 - -
Dod04g0748 381 CDD SANT 101 141 IPR001005 -
Dod04g0748 381 CDD SANT 45 90 IPR001005 -
Dod04g0748 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Dod04g0748 381 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Dod04g0748 381 Gene3D - 43 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0748 Dod-Chr4 13002453 13004197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0748 33 183 MYB Transcription Factor Family AT3G13540 71.257 5.69e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g0748 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0748 K09422 - jre:108982488 337.421