Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0746 ATGTCGAGGATATGTGTGAAGAATCTTCCAAAATATGTTGTCGAGGATCGACTACGCGAATTCTTTTCTGAGAAAGGAGAAATCACGGATGTCAAGCTTATGCGTACCAAAGATGGTAAGAGTCGCCAATTTGCTTTCATTGGATTTCATACGGAGCAGGAAGCTCAAGAAGCTATTCAATATTTCAATAAATCCTACCTTGACACTTGTAGAATTACTTGTGAGGTGGCTCGAAAACGTGGCGATTCAGAGCTTCCTCGTCCGTGGAGTCGACATTCGACCAAGAAAGAGAATAAGGTGATCCTGGATGTCGAAAAACATGCTAGACCGAAAGGGCAAGCACAAGGAGATGTTTCTGAGGACATTGATGACCCACAGCTTCAAGAATTTCTTCAAGTCATGCAGCCTCGGGCTAAGTCGAAACTGTGGGCGAATGATACGGCGATGGTATCCACTGCCGGCGAGAAGCAAACAGTACCAAATAAGGAAAGCAAAGATACATCAGTTGCAAGCCGTGCCGATTTACTTCAGAATTGCGGCTCGTTAGTGGATCACTTTCCTGATAATCCTGAACCTGACCAGTTACATGCACCTGAACACGATGTCGTTTCTGATATGGATTATTTCAAGAGTAAAGTGACAAATAAATGGTCTGATTCTGAAAGTGATGATGATGATGAAGACAACAATGATGATTCAGTAAGTGATGCTGATGGTGATGATGACAAAGACAATGATAGTCATGCTAGTGAAGGTGAAGAAAATTTTGACAAGAAATCTTCGGAAATAACCAAAAGAAATGGTGCTCAAGATTCAGAGTCAGACGTAAAGGGTCAGCCAGATACTTGTGGAGAGGATGTTGCCCATGAAAAATCTCAAATGAATACAGATGAGCAGGGTGGCCAATCATCAAATTCAGAAGAGAAGATAGGAGCTTTTGAGTCCTGTCGTCTCTTTGTCCGCAATCTGCCATATACCGCCACTGAGGAGGAGCTGGAAGAGCATTTTAGTAAGTTTGGTATTGTCTCACAGGTTCATCTTGTTGTTGACAAAAGTACAAAACGATCCAAAGGAATAGCATATGTTCTTTATTCATTTCCAGAATCTGCAGCCAGGGCATTAGAAGAATTAGATAATTCAATTTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGACCTTCAGACAATAAAGAGAACAATGTTTCCAAGGACCAAGGTGAGAAAACTCTCAAACAACGGAGAGAAGAAGAGAGGAAAACAGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGACACAGTTGTGGAAAACATTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTATTAGACCGAGAAGCTGATGATCTTGCTGTACGCATTGCTCTGGGAGAAACTCAAGTGATTTCAGAGACAAAAAAGGCATTTGCAAATGCTGGAGTGAATGTGGAGTCTTTGGAAAACCTTGCCAATGGAAAGGTTGATGGCCTAAAAAGAAGCAACCATGTACTTTTAGTGAAGAACTTGCCCTATGGTTCAACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTCGGTAATTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCCCTGATTGTTTACCTCGAATCGGCAGATGCTCGAGCGGCTTTTAGAGGTTTAGCTTACAAGCGCTACAAGGATGCTCCATTATACTTGGAATGGGCCCCATCCGACATTCTTAGCCAAAGTTCAACATCTAAAATCAATGAATTGAATACTGCAGTTGGCAAAAATGATGCCAAGCGGCTAATGTTGGAGCAACATGTGCAAAGAATATCAGAGGTGGACATTGATCCGGACAGAGTTGAGGCTCGGTCCTTGTTTGTCAAGAACCTCAATTTCAAAACGTCAGACGAGAGTTTAAGGAAACATTTTAGTGAACACCTGAAAGACGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAACGGGAAAAATGTTTCTATGGGGTTTGGATTTATCGAGTTTGACTCTATGGAGACTGCTACAGATGTTTGCAGAGATTTACAGGGGACTGTCTTGGAAGGGCATGCTCTTATTTTACAACTTTGTCATGTCAAGAATGATGGACAATCACAAAAGACAGTTGACAAGGATAAGAGTTCAACAAAATTGCTTGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATTTGAGACAATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTCGGAAGTCATAGAGGCTTTGCTTTTGTAGAGTATATTACTCAGCAGGAAGCACAGAATGCACTTAAGGCACTTTCAAGCACCCATCTGTACGGAAGGCATCTAGTGATAGAGAAAGCAAAAGAAGGTGAGAGTTTGGAAGAACTACGGGCACGTACAGCTGCTCAATTCAGTGATGAACAAAATGGATTCCAAAATGATACCAAGTTATCCAAGAAAAGGAAGCCCATGGCTATCTTAGATGAAGGAAAGATGAAGTTTGAAAGAATTGCTGCTGATTAG 2577 0.4129 MSRICVKNLPKYVVEDRLREFFSEKGEITDVKLMRTKDGKSRQFAFIGFHTEQEAQEAIQYFNKSYLDTCRITCEVARKRGDSELPRPWSRHSTKKENKVILDVEKHARPKGQAQGDVSEDIDDPQLQEFLQVMQPRAKSKLWANDTAMVSTAGEKQTVPNKESKDTSVASRADLLQNCGSLVDHFPDNPEPDQLHAPEHDVVSDMDYFKSKVTNKWSDSESDDDDEDNNDDSVSDADGDDDKDNDSHASEGEENFDKKSSEITKRNGAQDSESDVKGQPDTCGEDVAHEKSQMNTDEQGGQSSNSEEKIGAFESCRLFVRNLPYTATEEELEEHFSKFGIVSQVHLVVDKSTKRSKGIAYVLYSFPESAARALEELDNSIFQGRLLHVMPAIQRPSDNKENNVSKDQGEKTLKQRREEERKTAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVISETKKAFANAGVNVESLENLANGKVDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGNLDKIILPPTKTLALIVYLESADARAAFRGLAYKRYKDAPLYLEWAPSDILSQSSTSKINELNTAVGKNDAKRLMLEQHVQRISEVDIDPDRVEARSLFVKNLNFKTSDESLRKHFSEHLKDGRILSVKVKKHLKNGKNVSMGFGFIEFDSMETATDVCRDLQGTVLEGHALILQLCHVKNDGQSQKTVDKDKSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYITQQEAQNALKALSSTHLYGRHLVIEKAKEGESLEELRARTAAQFSDEQNGFQNDTKLSKKRKPMAILDEGKMKFERIAAD* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0746 858 Gene3D - 724 832 IPR012677 -
Dod04g0746 858 Gene3D - 505 605 IPR012677 -
Dod04g0746 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 631 714 IPR000504 GO:0003723
Dod04g0746 858 MobiDBLite consensus disorder prediction 400 427 - -
Dod04g0746 858 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 834 - -
Dod04g0746 858 MobiDBLite consensus disorder prediction 220 240 - -
Dod04g0746 858 SMART rrm1_1 632 710 IPR000504 GO:0003723
Dod04g0746 858 SMART rrm1_1 732 803 IPR000504 GO:0003723
Dod04g0746 858 SMART rrm1_1 317 390 IPR000504 GO:0003723
Dod04g0746 858 SMART rrm1_1 512 579 IPR000504 GO:0003723
Dod04g0746 858 SMART rrm1_1 3 75 IPR000504 GO:0003723
Dod04g0746 858 SUPERFAMILY RNA-binding domain, RBD 610 719 IPR035979 GO:0003676
Dod04g0746 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 583 IPR000504 GO:0003723
Dod04g0746 858 SMART rrm2_1 632 710 IPR003954 GO:0003676
Dod04g0746 858 SMART rrm2_1 3 75 IPR003954 GO:0003676
Dod04g0746 858 SMART rrm2_1 317 390 IPR003954 GO:0003676
Dod04g0746 858 SMART rrm2_1 732 803 IPR003954 GO:0003676
Dod04g0746 858 CDD RRM5_RBM19_like 631 712 IPR034423 -
Dod04g0746 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Dod04g0746 858 SUPERFAMILY RNA-binding domain, RBD 306 402 IPR035979 GO:0003676
Dod04g0746 858 SUPERFAMILY RNA-binding domain, RBD 508 587 IPR035979 GO:0003676
Dod04g0746 858 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Dod04g0746 858 MobiDBLite consensus disorder prediction 294 308 - -
Dod04g0746 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 574 IPR000504 GO:0003723
Dod04g0746 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 388 IPR000504 GO:0003723
Dod04g0746 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 733 800 IPR000504 GO:0003723
Dod04g0746 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 633 707 IPR000504 GO:0003723
Dod04g0746 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Dod04g0746 858 CDD RRM6_RBM19_RRM5_MRD1 731 805 - -
Dod04g0746 858 MobiDBLite consensus disorder prediction 241 293 - -
Dod04g0746 858 CDD RRM1_MRD1 2 77 - -
Dod04g0746 858 MobiDBLite consensus disorder prediction 393 427 - -
Dod04g0746 858 Gene3D - 283 431 IPR012677 -
Dod04g0746 858 Gene3D - 1 119 IPR012677 -
Dod04g0746 858 Gene3D - 606 723 IPR012677 -
Dod04g0746 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 394 IPR000504 GO:0003723
Dod04g0746 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 731 807 IPR000504 GO:0003723
Dod04g0746 858 MobiDBLite consensus disorder prediction 180 202 - -
Dod04g0746 858 CDD RRM3_RBM19_RRM2_MRD1 317 390 - -
Dod04g0746 858 MobiDBLite consensus disorder prediction 214 308 - -
Dod04g0746 858 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 834 - -
Dod04g0746 858 CDD RRM4_RBM19_RRM3_MRD1 511 582 - -
Dod04g0746 858 SUPERFAMILY RNA-binding domain, RBD 727 810 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0746 Dod-Chr4 12895537 12906891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0746 588 823 Eukaryotic Initiation Factors Gene Family AT1G49760 27.016 2.44e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0746 K14787 - gmx:100798742 1227.62