Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0745 ATGAGAGGAAGGAGTTACAGTCCATCCCCTCCGCCAGCAAGGGGTTACAGCCGACGAGGGAGGAGTCCCAGCCCTAGGGGCCGCTACTCCGGCCGCCCTAGAGACCTCCCTACAAGCCTCCTTGTTCGCAACCTTCGCCATGATTGTAGGCCTGAGGATCTTCGCAGACCTTTCGGCCAATTCGGTGCCCTCAAGGACATTTACCTGCCCAAGGATTACTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAATACGTGGATCCTGCTGATGCGGCCGATGCCAAATATCATATGGATGGCCAAGTCCTTCTTGGTCGGGAGTTGACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAAATGAGATGAGGACAAGAGAAAGAAGGGGTCGATTTAATGATCGAAGAAGGTCTCCTCCTCGTTATTCTCGATCGCCCCGCCACTCTCGATCTCCCCCACCACGCCATAGATCACGTTCCCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTGTGTCACCTGAGGGTAGAAGGTACAGTCGAGAAAGATCATATTCACACCATAGTAGAGAGAGGTCATACTCACGTTCTCCACCCTATAATGGGGGCTCAAGGAGCCGTAGTCAGAGTCCAGCAAAGGGCCCCAGCCGGAGCAGAAGTCCGAGTCCAAGCCGCGATGTTCGGGAACCAGTGCGTGGTAGGGCCCCCAGTCAGTGA 741 0.5385 MRGRSYSPSPPPARGYSRRGRSPSPRGRYSGRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPNEMRTRERRGRFNDRRRSPPRYSRSPRHSRSPPPRHRSRSRSRDYYSPPPKRREYSRSVSPEGRRYSRERSYSHHSRERSYSRSPPYNGGSRSRSQSPAKGPSRSRSPSPSRDVREPVRGRAPSQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0745 246 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
Dod04g0745 246 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 230 - -
Dod04g0745 246 SMART rrm1_1 39 112 IPR000504 GO:0003723
Dod04g0745 246 MobiDBLite consensus disorder prediction 117 141 - -
Dod04g0745 246 MobiDBLite consensus disorder prediction 1 37 - -
Dod04g0745 246 MobiDBLite consensus disorder prediction 159 202 - -
Dod04g0745 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Dod04g0745 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 230 - -
Dod04g0745 246 MobiDBLite consensus disorder prediction 203 229 - -
Dod04g0745 246 MobiDBLite consensus disorder prediction 142 158 - -
Dod04g0745 246 MobiDBLite consensus disorder prediction 117 246 - -
Dod04g0745 246 Gene3D - 4 130 IPR012677 -
Dod04g0745 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0745 Dod-Chr4 12873993 12877581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0745 38 169 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 1.47e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0745 K12900 - gmx:100775883 290.426