Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0730 ATGCGAACTTCATGGGCTGATTTGGCTGCGAATTCCGCAGCTGAGAATGCAGGTGCTGGTTCCTCTGCCAACAATGCGGGGGCAGGTAACAGTTCAACTCCTTCGCGGCCAGTTTATGTGCCTCCGCATCTGAGGAACCGCCAGTCTTCTGCGGAATCGCCGGCTGCCCCGCCGTTTAGTGGCGCAGGCGGTGGCGTGGCTTCTGGTTCTGGTACTGGTGCTGTTAATGCTGGATCAAGGTGGGCTGCGCCCCGAAATGATTACCGTTCGGGGGTTGGCGGTGGCGGCGGCGGCAGTCGTGCAGGCGGATGGGGTAACAGAAGTGGCGGTTGGGATCGCGGCCGGGACCGTGAGGTCAATCCCTTTGGAGATCAGGATGATGCAGAGCAGGATTTTAGTGAGCAGGAGAATACAGGGATAAATTTTGATGCCTATGAGGATATTCCCGTGGAGACCAGTGGGGAGAATGTGCCCCCGCCTGTGAATACATTCGCCGAGATTGACTTGGGTGAAGCACTTAACCAGAATATAAGAAGGTGCAAATATGTGAGGCCGACACCTGTTCAGCGGCATGCCATACCGATTTCCCTGGGTGGAAGGGATTTGATGGCTTGTGCGCAGACCGGTTCTGGAAAGACGGCTGCTTTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCCATGCAGAGGCCACCTCGCGGGGTGCGAACAGTGTATCCACTTGCTCTTGTTCTCTCCCCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCTACTCCAGGAAGACTGGTAGATTTACTGGAGAGAGCTAGAGTTTCTCTGCTGATGATCAGATATCTGGCCCTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCGCAAATACGGAAGATTGTGGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGCTTTTCAGTGCCACATTTCCAAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTACATTTTCCTTGCTGTTGGAAGAGTTGGATCAAGTACCGATTTGATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCGCTGGAGCATTGGTTGTGTATGAATGGTTTCCCAGCTACTACTATTCACGGTGACAGGAGCCAACAGGAAAGAGAATTGGCATTAAGGTCATTCAAAAGCGGCAACACCCCCATATTGGTCGCCACCGATGTGGCTGCGCGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTGCACCGTATTGGAAGGACAGGAAGAGCTGGGAAGAAAGGCCTTGCAACTGCATTCTTCAATGACAACAATGCATCCCTAGCAAGGGCTTTAGCAGAGCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGTTGTCACGGTATGCTGCTCGATCTTCATTTGGTGGTGGTAGGAACCGTCGTCCAGGAGGTGGCCGTTTTGGTGGCCGTGACTTCCGAAGAGATGGTTCTTTCGGTAGGGGTGGTTCTGATTACTACGGTGCTGGAAACAGCAGTGGTGGTGGATATGGGGCATCTGGTGGATACGGTGGAGGATACGGCGGTCCTGGCGGAACCAGTGCATGGGACTGA 1872 0.5123 MRTSWADLAANSAAENAGAGSSANNAGAGNSSTPSRPVYVPPHLRNRQSSAESPAAPPFSGAGGGVASGSGTGAVNAGSRWAAPRNDYRSGVGGGGGGSRAGGWGNRSGGWDRGRDREVNPFGDQDDAEQDFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVRPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPMQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLLMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCMNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALAELMQEANQEVPAWLSRYAARSSFGGGRNRRPGGGRFGGRDFRRDGSFGRGGSDYYGAGNSSGGGYGASGGYGGGYGGPGGTSAWD* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0730 623 CDD DEADc_DDX3_DDX4 163 384 IPR044763 GO:0003724|GO:0005524
Dod04g0730 623 CDD SF2_C_DEAD 390 526 - -
Dod04g0730 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 378 IPR014001 -
Dod04g0730 623 Pfam Helicase conserved C-terminal domain 402 517 IPR001650 -
Dod04g0730 623 MobiDBLite consensus disorder prediction 1 37 - -
Dod04g0730 623 MobiDBLite consensus disorder prediction 562 582 - -
Dod04g0730 623 Gene3D - 118 380 IPR027417 -
Dod04g0730 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Dod04g0730 623 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 590 - -
Dod04g0730 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 556 IPR001650 -
Dod04g0730 623 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 67 590 - -
Dod04g0730 623 Pfam DEAD/DEAH box helicase 186 367 IPR011545 GO:0003676|GO:0005524
Dod04g0730 623 MobiDBLite consensus disorder prediction 1 132 - -
Dod04g0730 623 Gene3D - 381 560 IPR027417 -
Dod04g0730 623 SMART helicmild6 436 517 IPR001650 -
Dod04g0730 623 MobiDBLite consensus disorder prediction 110 124 - -
Dod04g0730 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 535 IPR027417 -
Dod04g0730 623 SMART ultradead3 181 393 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0730 Dod-Chr4 12072430 12078988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0730 160 549 Eukaryotic Initiation Factors Gene Family AT3G19760 31.714 3.30e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0730 K11594 - gmx:100795756 944.88