Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0680 ATGGCGCCGTCATGTCAAAGCTCCTCAAAGCACTCACCCCAACCCCGTCCGGCTGGTCCACGACAACCTCGTACTGCCAAGTGGCCAGGCGTCAAGTGCGACGGCTCCTCCTCCAGTGTCACATCCATAAACCTCCAGTCGAAGTCACTCTCCGGCACACTGCCTTCCGATCTCAACAAGCTCACCCAGCTCTCCACACTCTCCCTCCAGAACAACGCGCTCGGCGGCGCGTTGCCCTCACTCGCCAACCTCACCATGCTCGAGAACCTCTACCTCGGCTCCAACAACTTCACCTCCGTCCCCAAAGACTGCTTCTCCGGCCTCACCAGCCTCCAGATGCTCAGCATGACCACCAACGTCGACCTCGCGGCATGGACGATCCCATCCGAGTTGACTCAGTCCACAAACCTCGTAACCCTCGAACTCGGCACCACAAACCTCGTCGGCACCCTCCCGGACTTCTTCGACTCCTTTCCTGGCCTCACCAGCATCCGCCTCTCTTACAACAACCTCACCGGGCAGCTGCCCCGGTCACTAGCCAGATCCTCCGTCGCGAGTCTCTGGCTCAACAACCAGAAAGACGGGTCCGGGTTCTCCGGCACAATCGACGTGTTATCTTCCATGACGCGCTTGTCTCAGGTTTGGCTTCAGAAGAACCAGTTCACTGGCCCCATCCCTGATTTGTCGAACTGCACTGCTTTGTTCGATTTGCAGCTCCGGGATAACCAGTTAACCGGCGTGGTTCCGGTTGCTTTGACGAAAATGCCGAGTTTGCAGAACGTTTCTTTGGATAATAACAATTTGCAGGGTCCTAAGCCGGAGTTCGGGAAGGGAGTGACTGCTACGCTTGATGGGATCAACAGCTTTTGTTCTGCTTCTGGGCCTTGTGATGATAGGGTGAACACTTTGCTTGCTGTTGCGGCGGGTTTCGGGTACCCGTATATCTTGGCGAGCAAGTGGGGAGGGAATGATCCTTGTCAAGGGTGGAGCTATGTTGTCTGTGCTGCGGGGAAGATTGTGACGGTGAATTTGGGGAATCTGGGATTGAACGGAACGATCTCGCCGGCTTTCGCGAATTTGACCGATTTGAGGACATTGTTTTTGAATAACAACAATTTGAGTGGACCAATACCAGAAGGTTTGACTAATTTGGCTCAGCTTGATGCTTTGAATGTGTCTAACAACAACTTGACTGGGGATATTCCGAAATTTTCGTCTAAGGTGAAGTTTAGTTATCAGGGTAATGCTTTGCTTGGGCATTCTGGAGGTGGTGGTGGAAGTGGGAGTAGTCCTTCTGGTGGTTCTGGTGATGCGCCGAGTGGAAGTCCTTCTAAGGCATCAAGTGGTTCTTCGCTTTCAGCTGGTTTGATTGTAGGGATAGCTATTATCGCTGCGTTTTTCGTTGCGGTGGTATTGTTTGTGTTTTGCAAGTGCTATGCCAAGAACAAGCACAGGAAATTCGGTAGGGTTAATAACCCTGCGAATGGGAAAGGTGAGGTTAAGATTGATATGATGAGTGTTGCCAATTCCAATGGGCTTGGCGGAGGAGTTCCGAGCGAGTTGCAAAGCCAGGGCAGTGAGAGGAATGAAATTCCTGTTTTTGAGGGTGGGAATGCCACGATTTCAATTCAAGTTCTTCGGCAGGTGACTAATAACTTCAGCGAGGATAACATTTTGGGTAGGGGTGGATTTGGTGTTGTGTACAAAGGGGAATTGCATGATGGGACTAAGATTGCCGTGAAGAGGATGGAATCTGTCGCGATGCAAAGTAAAGGAATGAATGAGTTCCAAGCTGAGATTGCGGTTCTGAGTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATATTGCATCAATGGCCATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGGACACTAACACAACATCTGTTTGATTGGCGAGAGAATGGCTGTGCTCCTTTGACTTGGAAACAAAGGGTGGCAATAGCCCTGGATGTTGCAAGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAGAGCTTCATCCACAGAGACTTGAAACCCTCAAACATACTGTTGGGTGATGACATGAGAGCTAAGGTTGCTGATTTTGGTTTGGTTAAAAATGCACCAGATGGGAAGTATTCAGTTGAGACACGTTTGGCAGGAACTTTTGGATATCTTGCACCTGAATATGCAGCTACTGGAAGAGTGACAACCAAAGTAGATGTCTACGCATTTGGAGTAGTTTTGATGGAACTGATTACTGGAAGAAAGGCATTGGATGATACTGTCCCTGATGAAAGGTCACACTTGGTTTCATGGTTCAGAAGGGTACTAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAAACTCTAGACCCAGATGAGGAAACCATGGAGAGCATTTATAAGGTGGCTGAACTGGCAGGCCATTGCACTGCACGTGAGCCATACCAAAGGCCTGATATGGGGCATGCAGTGAATGTGTTGGTTCCTCTTGTGGAGCAATGGAAGCCTACCAACCATGAAGAAGAAGAAGGTTATGGCATTGACCTCCACATGAGCCTTCCTCAAGCTCTGAGAAGGTGGCAAGCCAATGAAGGCACTTCCACTATGTTCAATGACGTGTCCTTCTCCTCACAAACCGAGTCAAGCATCCCTGCAAAACCTTCGGGATTCGCAGACTCCTTTAGCTCAATGGATTGCCGGTAA 2709 0.4976 MAPSCQSSSKHSPQPRPAGPRQPRTAKWPGVKCDGSSSSVTSINLQSKSLSGTLPSDLNKLTQLSTLSLQNNALGGALPSLANLTMLENLYLGSNNFTSVPKDCFSGLTSLQMLSMTTNVDLAAWTIPSELTQSTNLVTLELGTTNLVGTLPDFFDSFPGLTSIRLSYNNLTGQLPRSLARSSVASLWLNNQKDGSGFSGTIDVLSSMTRLSQVWLQKNQFTGPIPDLSNCTALFDLQLRDNQLTGVVPVALTKMPSLQNVSLDNNNLQGPKPEFGKGVTATLDGINSFCSASGPCDDRVNTLLAVAAGFGYPYILASKWGGNDPCQGWSYVVCAAGKIVTVNLGNLGLNGTISPAFANLTDLRTLFLNNNNLSGPIPEGLTNLAQLDALNVSNNNLTGDIPKFSSKVKFSYQGNALLGHSGGGGGSGSSPSGGSGDAPSGSPSKASSGSSLSAGLIVGIAIIAAFFVAVVLFVFCKCYAKNKHRKFGRVNNPANGKGEVKIDMMSVANSNGLGGGVPSELQSQGSERNEIPVFEGGNATISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMQSKGMNEFQAEIAVLSKVRHRHLVALLGYCINGHERLLVYEYMPQGTLTQHLFDWRENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTNHEEEEGYGIDLHMSLPQALRRWQANEGTSTMFNDVSFSSQTESSIPAKPSGFADSFSSMDCR* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0680 902 SMART LRR_typ_2 360 384 IPR003591 -
Dod04g0680 902 SMART LRR_typ_2 158 182 IPR003591 -
Dod04g0680 902 SMART LRR_typ_2 255 278 IPR003591 -
Dod04g0680 902 SMART LRR_typ_2 84 107 IPR003591 -
Dod04g0680 902 SMART LRR_typ_2 61 83 IPR003591 -
Dod04g0680 902 MobiDBLite consensus disorder prediction 425 445 - -
Dod04g0680 902 MobiDBLite consensus disorder prediction 879 902 - -
Dod04g0680 902 Gene3D Transferase(Phosphotransferase) domain 1 631 852 - -
Dod04g0680 902 MobiDBLite consensus disorder prediction 1 15 - -
Dod04g0680 902 SUPERFAMILY Protein kinase-like (PK-like) 529 838 IPR011009 -
Dod04g0680 902 ProSiteProfiles Protein kinase domain profile. 553 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0680 902 PANTHER OSJNBA0070M12.3 PROTEIN 25 902 - -
Dod04g0680 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Dod04g0680 902 SUPERFAMILY L domain-like 27 405 - -
Dod04g0680 902 Gene3D Ribonuclease Inhibitor 6 292 IPR032675 -
Dod04g0680 902 Gene3D Phosphorylase Kinase; domain 1 516 630 - -
Dod04g0680 902 Pfam Protein tyrosine and serine/threonine kinase 556 827 IPR001245 GO:0004672|GO:0006468
Dod04g0680 902 ProSitePatterns Protein kinases ATP-binding region signature. 559 581 IPR017441 GO:0005524
Dod04g0680 902 MobiDBLite consensus disorder prediction 422 445 - -
Dod04g0680 902 Pfam Leucine rich repeat 63 119 IPR001611 GO:0005515
Dod04g0680 902 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 25 902 - -
Dod04g0680 902 CDD STKc_IRAK 559 832 - -
Dod04g0680 902 Gene3D Ribonuclease Inhibitor 297 421 IPR032675 -
Dod04g0680 902 MobiDBLite consensus disorder prediction 1 39 - -
Dod04g0680 902 SMART serkin_6 553 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0680 Dod-Chr4 10215196 10218921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0680 40 829 Receptor kinase-like Gene Family AT5G07280 31.907 2.23e-92 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Dod04g0680 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0680 - - gmx:100783655 1355.5