Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0633 ATGAATTTGCTCCATGTACTTGGTTTTGGCCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGATTGTGTCTTTCATTTACATCAACTGGTTCATTAGCTGTGGAATTAAGGACACCAAGATGGGTCTCCTTGGGGATGGTGGTGGTGGCAAGATGTGGCTCAAATGGTGGGAGAACATCTTGGGGAACGCTTGTAAGATCCACCAACAATACTATCACTATATTGGGTCCAAGAGCGTGAAGAGAGCCTTGTGGAGAAAGCTTTTGCTGACATGGGTGGTTGGTTGGTCCATTGTATCATTGTGGATCTTCTTCTGCATGAGCCTACAAGCCACTGAGAAGAGGAAAGAGACTCTGGCTAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTACACCTTCCATCATGCCAAGGACCCTTCTGCCATTGACCAGAGAACTTTTGCGAGGTATACGGAAAGAACTGCCTTTGAGAGGCCCCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGATGGACTATTAAGAGGATGGATACCGTGGAACAGAACCCGGTTCAAGAGGATGATTTTGCCCTAGAGGCATTGGAGCCATCCCCCATTCAGGAAGAGTATGCTCCTGTCATCTTTGCACAGGATACAATCAAACATGTGATTTCTGTTGATGTGCTTTCTGGAAAGGAAGACCGGAAAAATGTGTTGCGTGCAAGAGAGTCAGGCAAAGGAGTTTTGACTGCTCCCTTCAGGCTGCTCAAAACAAATCGTCTAGGAGTTATCCTGACATTTGCAGTATACAAGAGAGAACTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTAGGTGGGGTGTTTGACATTGAGTCTTTAGTGGAGAAATTGCTTCAGCAACTTTCTAGCAAGCAAACTGTCATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGTTCAAATGCATCAGGTGATGGATACTATCATGTCAGCACTCTTAACTTTGGAGATCCCTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCGTGGCCATGGTTGGCAATAACCACTTCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCCACTCTGAATCGAATTGCCAAAGTAGAGGATGATTACTGCAAGATGATGGAGCTTAAAAAACAAGCTGAGGAAGCTGATGTTGCAAAATCCCAGTTCCTTGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGAATATGCTTATGGACACAAATCTAGATGAAACACAACAGGAATATGTCAGAACAGCACAGGGTAGTGGTAAAGCTCTGGTGTCCCTCATAAATGAACTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTAGAGCTAGAGGCAGTGCTGTTTGACTTACGGGCGATTTTGGATCATGTGTTATCACTATTTTCTGAGAAGTCTCAAGAAAAAGGAGTAGAGTTGGCAGTTTATGTATCGGATCAGGTTCCTGAACAGCTAATTGGTGATCCAGGAAGGTTTAGACAAATAATTACAAATCTCATGGGTAACTCTATTAAGTTCACAGACAAAGGGCATATCTTTGTCACCATCCATCTTGTTGAGGAGGTTGTCCATTCGCTAGAAGTTGAGACAGAATTAACCTCAAAAGATACCTTAAGTGGCTTGCCAGTTGCTGATAGTCGCAAGAGTTGGGAAAGATTCCAGGCTTTCAGTCAACAGGGGCCTCTTGGTTCTTTCTCATCCTCCTCCAGCAATCTCATCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTAGAAGCTCAGGATCACATCTTCACTCCATTCATGCAGGTAGATCCATCCATCTCCAGAAAACATGGGGGAACTGGTATTGGTCTGAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGCACACCTAAGATTGGATCCACTTTCACATTTACGGCTGTCTTCACCAATGGATGTCACAATTCAAGTGAGAGTAGAAGTCAACAAATCATCAAGCAGCCTCATTCTGCATCGTCAGAATTTCGGGGCATGACTGCATTAGTTATTGACCCCAGACCTGTTCGAGTTAAAGTGTCAAGATATCACCTCCAACGACTTGACATTCATGTTGAATTAGTTTCAGATTTGAATCAAGGTTTGTCCATCATAAGCAACGGGAATGTAGCTATTAATATGGTGTTTATTGAGCAGGAGGTCTGGGATAGAGACTCCGGCATTTCAACTCCCTTTGTTAATAACACCAGGAAAGTTGATCGCGGGGTTCCGCCAAAGCTATTCATTCTTGTTAATTCTAATAGTTCTTTTAGAGCAAGTTCTGTAACATCTGGTGTTCATAATCCAACAGTCATCACAAAACCTCTAAGAGCACATGACAATGGTGTGAACCGTGCAGTCGCAGCCGGTGCCTTGAAAAAATATGGAGCTGAAGTGGTTTGTGTAAGCAGTGGAAAAGATGCCATCTCTTCACTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAAGAGAATTCGGGAGATCGAGTGCAGGGTGAACAGAGAATTATCTGCAGAAGCCGCGGAGAACAATTCAAACTGGCATGTGCCCATTTTGGCTAATGACTGCAGACGTGATCCAGGCTACACATGA 2877 0.4348 MNLLHVLGFGLKVGHLLLVLCCWIVSFIYINWFISCGIKDTKMGLLGDGGGGKMWLKWWENILGNACKIHQQYYHYIGSKSVKRALWRKLLLTWVVGWSIVSLWIFFCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILIYTFHHAKDPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTVEQNPVQEDDFALEALEPSPIQEEYAPVIFAQDTIKHVISVDVLSGKEDRKNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLSSKQTVIVNVYDTTNHTHPIAMYGSNASGDGYYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATLNRIAKVEDDYCKMMELKKQAEEADVAKSQFLATVSHEIRTPMNGVLGMLNMLMDTNLDETQQEYVRTAQGSGKALVSLINELLDQAKIESGKLELEAVLFDLRAILDHVLSLFSEKSQEKGVELAVYVSDQVPEQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSLEVETELTSKDTLSGLPVADSRKSWERFQAFSQQGPLGSFSSSSSNLINLIVSVEDTGEGIPLEAQDHIFTPFMQVDPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSTPKIGSTFTFTAVFTNGCHNSSESRSQQIIKQPHSASSEFRGMTALVIDPRPVRVKVSRYHLQRLDIHVELVSDLNQGLSIISNGNVAINMVFIEQEVWDRDSGISTPFVNNTRKVDRGVPPKLFILVNSNSSFRASSVTSGVHNPTVITKPLRAHDNGVNRAVAAGALKKYGAEVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREIECRVNRELSAEAAENNSNWHVPILANDCRRDPGYT* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0633 958 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 644 718 IPR003594 -
Dod04g0633 958 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 557 625 IPR003594 -
Dod04g0633 958 ProSiteProfiles Response regulatory domain profile. 855 958 IPR001789 GO:0000160
Dod04g0633 958 SUPERFAMILY CheY-like 859 922 IPR011006 -
Dod04g0633 958 Gene3D - 509 720 IPR036890 -
Dod04g0633 958 CDD REC_hyHK_CKI1_RcsC-like 861 948 - -
Dod04g0633 958 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 499 715 IPR036890 -
Dod04g0633 958 Gene3D CHASE domain 162 391 IPR042240 -
Dod04g0633 958 Pfam His Kinase A (phospho-acceptor) domain 445 510 IPR003661 GO:0000155|GO:0007165
Dod04g0633 958 PANTHER HISTIDINE KINASE 3 58 859 - -
Dod04g0633 958 PANTHER TWO-COMPONENT HISTIDINE KINASE 58 859 - -
Dod04g0633 958 CDD HisKA 445 506 IPR003661 GO:0000155|GO:0007165
Dod04g0633 958 Pfam Response regulator receiver domain 860 924 IPR001789 GO:0000160
Dod04g0633 958 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 433 511 IPR036097 GO:0000155|GO:0007165
Dod04g0633 958 Gene3D - 413 508 - -
Dod04g0633 958 Gene3D - 109 161 - -
Dod04g0633 958 PRINTS Bacterial sensor protein C-terminal signature 704 717 IPR004358 GO:0016310|GO:0016772
Dod04g0633 958 PRINTS Bacterial sensor protein C-terminal signature 663 673 IPR004358 GO:0016310|GO:0016772
Dod04g0633 958 PRINTS Bacterial sensor protein C-terminal signature 645 659 IPR004358 GO:0016310|GO:0016772
Dod04g0633 958 PRINTS Bacterial sensor protein C-terminal signature 680 698 IPR004358 GO:0016310|GO:0016772
Dod04g0633 958 Gene3D - 854 954 - -
Dod04g0633 958 ProSiteProfiles CHASE domain profile. 158 384 IPR006189 -
Dod04g0633 958 SMART HKATPase_4 557 720 IPR003594 -
Dod04g0633 958 SMART HisKA_10 445 510 IPR003661 GO:0000155|GO:0007165
Dod04g0633 958 ProSiteProfiles Histidine kinase domain profile. 452 720 IPR005467 -
Dod04g0633 958 PANTHER HISTIDINE KINASE 3 861 938 - -
Dod04g0633 958 Pfam CHASE domain 161 357 IPR006189 -
Dod04g0633 958 PANTHER TWO-COMPONENT HISTIDINE KINASE 861 938 - -
Dod04g0633 958 SMART CHASE_2 158 359 IPR006189 -
Dod04g0633 958 CDD HATPase_EvgS-ArcB-TorS-like 562 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0633 Dod-Chr4 9316406 9322132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0633 1 948 Miscellaneous Gene Families AT1G27320 64.215 0.0 1258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g0633 CHASE 4.7e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0633 K14489 - gmx:100801546 1554.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0633 04 9316406 9322132 Dod04g0633 04 9316406 9322132 ECH