Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0632 ATGGAGTGGAATGCTAAATCTCCTGGGCAATGGGACTGGGAGCACTTATTCTTCTTCAATGCAAAAGCAACAGAAAATCCTAGGATACAAACAACAGATTGGAGTGCTGAAGCAGATGGAGAAATCAATGTTGGACTGATATATCCATCAGGTGGTAGTGGTTGTTCTGGGTCTGAACTAATGCATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCTATCAATTCATCATCAAATGGGGATAGCAAAACATCCACATCCATGTTCACTTTTGAAGGTTCTCAAGATGGTTCAACTGGTAAGAAAGAATTGTCCAAAGAAGAGCCAGTTACTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAAACCATCTTCTACCAGGGTTCCTATTTCATCATCTTTGAGTGCCGGAAGGAAATGTAAACCCCGTAATCAGAACTTAGAGCAGCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCTCTAAGGTGCTTATAGCTGGTTTGGAACGACGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTATCAGAGTTCGATGATAAAAAGAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCAGAAGCAGTCCAATTAAATACACCGGCTTTGTCTTCATCACCCTATGATGGGAGGCAACTGATTAGCCCATTTGCCTATTCAAGGAATGCTACAAATTTAGATTGGCAAGGCATACACAGCAGCAGGCTCCCCCAGACAAAAGATTTTCTCATGAGACCTGCAAAAGCCTTCAATATTGTCACTATGCTTTCTGATGGTTCAAGTGGCCTTCTTACATCCAAAGGCATAGCTCCAGGTAAAGATCCTATTACAATGTCTGATCCGAACGCCGCACAAGATTTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCAAGGGCTACACATGCGATGACCAATCAGCGCTTACCTCTTGCTTCATCGGAGTATTGGCATGGCGTTGATCAACAGCCAGCCAATTCCAGCGTGTGTATCTCGTACTCGGATTGTGATCATAGCAATCGCTTTCAAGACTTGCACATGTTGAGCGCACCCAATGAATCCGGTTTTCCTTGCGACCTGCTGGATTGA 1239 0.4463 MEWNAKSPGQWDWEHLFFFNAKATENPRIQTTDWSAEADGEINVGLIYPSGGSGCSGSELMHASSSRSSKSASINSSSNGDSKTSTSMFTFEGSQDGSTGKKELSKEEPVTGEPLLTLKLGKRLYFEDVCAGSDSKKPSSTRVPISSSLSAGRKCKPRNQNLEQPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSSKVLIAGLERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTPALSSSPYDGRQLISPFAYSRNATNLDWQGIHSSRLPQTKDFLMRPAKAFNIVTMLSDGSSGLLTSKGIAPGKDPITMSDPNAAQDFNRALSLLSTNSRATHAMTNQRLPLASSEYWHGVDQQPANSSVCISYSDCDHSNRFQDLHMLSAPNESGFPCDLLD* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0632 412 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Dod04g0632 412 MobiDBLite consensus disorder prediction 132 158 - -
Dod04g0632 412 MobiDBLite consensus disorder prediction 57 98 - -
Dod04g0632 412 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Dod04g0632 412 MobiDBLite consensus disorder prediction 225 253 - -
Dod04g0632 412 Gene3D - 158 228 IPR036893 GO:0003677|GO:0005634
Dod04g0632 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 407 - -
Dod04g0632 412 MobiDBLite consensus disorder prediction 57 110 - -
Dod04g0632 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 407 IPR044817 GO:0003677
Dod04g0632 412 MobiDBLite consensus disorder prediction 134 158 - -
Dod04g0632 412 Pfam SBP domain 167 240 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0632 Dod-Chr4 9247790 9253583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0632 1 348 SBP-box Gene Family AT5G43270 42.005 2.71e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod04g0632 SBP 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0632 - - gmx:100781289 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0632 04 9247790 9253583 Dod04g0632 04 9247790 9253583 ECH