Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0613 ATGGCGGAGCAAGTAGAGATTGTTGAAGAGGAGAACGCTGATTCGACCCGGCCCGAGTTTCCGACGGGTCGGGTGAAGAAGATAATGAGGCTGGACGATGAGGTGAAGAGGGTGAGCGCAGAAGCATTGTTCCTGGTGTCGCGCTCCACGGAGCTCTTCCTCCAGTTCCTGGCGGAGAAGTCAGCGCGCGTCGCAATCGAGAAGAAGCGCAAGACCCTGAAGCTGGAGCATGTGAGAATCGCAGTGAAGAGGCACCAGCCAACCAGCGATTTCCTCCTCGATTCGCTCCCGCTGCCACCCCAGCCCGAAAACCCACGCGCTCCGGCCGCCGATCGGAGCAAACCTGATAAGGCCCCTCCCGCCGGGACTCGCCGCATCGATCTGTTCTTCCGAAAGCAGGAAGCCGAAGCAGCACCCGAAGCTGAAGCCACGGCGGAGGCCGAAGTCGGAGGCGGAGCCGAACCTGAAGCCCCGGTGCCCGTAGATGAGTCTTAG 495 0.6121 MAEQVEIVEEENADSTRPEFPTGRVKKIMRLDDEVKRVSAEALFLVSRSTELFLQFLAEKSARVAIEKKRKTLKLEHVRIAVKRHQPTSDFLLDSLPLPPQPENPRAPAADRSKPDKAPPAGTRRIDLFFRKQEAEAAPEAEATAEAEVGGGAEPEAPVPVDES* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0613 164 MobiDBLite consensus disorder prediction 109 139 - -
Dod04g0613 164 SUPERFAMILY Histone-fold 16 106 IPR009072 GO:0046982
Dod04g0613 164 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g0613 164 Gene3D Histone, subunit A 1 97 IPR009072 GO:0046982
Dod04g0613 164 MobiDBLite consensus disorder prediction 89 164 - -
Dod04g0613 164 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 134 - -
Dod04g0613 164 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 8 134 - -
Dod04g0613 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 82 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0613 Dod-Chr4 8820059 8820553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0613 10 137 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.500 6.89e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dod04g0613 CBFD_NFYB_HMF 3.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0613 - - adu:107468882 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0613 04 8820059 8820553 Dod04g0613 04 8820059 8820553 ECH