Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0609 ATGGTGAAGTACTCCAGAGAACCCGACAACCCCACCAAGTCTTGCAAGGCTAGAGGCGCTGACCTCAGGGTTCATTTCAAGAATACTAGGGAGACTGCTTTTGCAATCAGGAAGCTTCCCCTTGCCAAGGCTAAAAGATACTTGGAGGATGTCTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTCGTGGTGTTGGGAGGACTGCCCAGGCGAAGAATAGGCATTCGAATGGACAAGGACGCTGGCCTGTCAAGTCAGCTAAATTCATCCTCGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTCGATGCACTCTACGTTTCTCATATCCAAGTTAACCAAGCACAGAAACAAAGACGCCGCACCTACCGAGCTCATGGAAGAATCAATCCTTACATGTCATCTCCCTGCCACATTGAGTTGATTTTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACAAGCAAGAAGAAGTCTCAAGCTCTTCGAAGCGGTGCTTCATCCTAA 549 0.4882 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQALRSGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0609 182 MobiDBLite consensus disorder prediction 154 182 - -
Dod04g0609 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dod04g0609 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dod04g0609 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Dod04g0609 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dod04g0609 182 MobiDBLite consensus disorder prediction 168 182 - -
Dod04g0609 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Dod04g0609 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Dod04g0609 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Dod04g0609 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Dod04g0609 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0609 Dod-Chr4 8765189 8767624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0609 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.912 1.18e-118 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0609 K02880 - jre:108982519 346.28