Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0604 ATGTTGCTGAGGTTGAAGAAAATTATTTTGCAGCAAGTGATGCCAAGTTGCATGGAGGAATGTGCAAGAGTCTTTCTGCAATATACTGTAAAATATTGTCAATATTTCCTTCTTTGGAAGAAGCTAGGCCTAGGAGCAAATCCTGGAATTCAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGGCAAAGAAAGTTCTTTGGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCGGTTCTTCTAAAATTTGGGAAAGCTAAGTCTGCACTCGTTGACAGTCTTAAACTAGTGGAAGACATTGTTCCACAGTCTATTGGGTGTCAGATCGAGGAAATTGTGAATGAACTTTCAAGTACGGTATTTGCACTTGACCCATCAGAGAAAGAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGGAGGAAGTTTGACAACTCTACAGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATCATGTCTTCAAGAATAGCTCTTACTGAAAGAAGAGCTCTCAAAAGACTCATTGAAAGGGCACGAGCTGAGGAAGACAAGCGGAAAGAGTCAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAACGATTCTCAGGGTTCTCAACCTTGTTCTCCAACTGTTCAGAGATCTGTTGAGGATGGTGTTCCTGGTAGTCATTCTCAGGCCTTTGATAGACAACTTTCAAAACTTAATTCCTTTAATTTTAAGTCAAATAATAGGAAATCCGGACAGATGCTCCTTCCACCTGAAGAGCTAAGGTGTCCAATATCTCTGCAACTTATGAGCGATCCTGTTATTATTGCTTCTGGTCAAACATATGAAAGGGTTTGCATAGAAAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTAAGCAGAAACTTCAACATCTTTTTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTGGCTAATTGGTGTGAACAGAATGCAATTCCTATTCCTCAAGGCCCACCTGAATCTCTTGATTTTAACTACTGGAGATTGGCACTTATCAGATTCTGA 1119 0.3986 MLLRLKKIILQQVMPSCMEECARVFLQYTVKYCQYFLLWKKLGLGANPGIQALCSLHVALEKAKKVLWHCSECSKLYLAITGDSVLLKFGKAKSALVDSLKLVEDIVPQSIGCQIEEIVNELSSTVFALDPSEKEVGDDLIALLQQGRKFDNSTDSSELECFHQAATRLGIMSSRIALTERRALKRLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSVEDGVPGSHSQAFDRQLSKLNSFNFKSNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFSDGHNTCPKTKQKLQHLFLTPNYCVKGLVANWCEQNAIPIPQGPPESLDFNYWRLALIRF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0604 372 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Dod04g0604 372 CDD RING-Ubox_PUB 282 324 IPR045210 -
Dod04g0604 372 PANTHER U BOX DOMAIN-CONTAINING 47 363 - -
Dod04g0604 372 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Dod04g0604 372 MobiDBLite consensus disorder prediction 223 250 - -
Dod04g0604 372 SUPERFAMILY RING/U-box 272 352 - -
Dod04g0604 372 MobiDBLite consensus disorder prediction 221 250 - -
Dod04g0604 372 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 47 363 - -
Dod04g0604 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Dod04g0604 372 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0604 Dod-Chr4 8677536 8679932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0604 32 369 U-box Gene Family AT1G24330 72.807 4.62e-176 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0604 - - gmx:100804344 568.926