Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod04g0582 | ATGCTCCCAACACCAACGGCACCGTCGAGAGCAACCACGAGGAACCCACCGGAGAACGGCCAGGACGGTGGAGGCACGAACTCGCACCCTCAGATTGCGAAACCCTTGCTCTCCGAGAATGGCTTGACCGGCACCACCACCCGCAGCGGCACCACCGATAAGGACCAATCCGGCGGCGAGGAGGAGACCACCAGTAGGCGCCGCCGCCGCAGCCGGTGGGATCCGCAGCCCGAATCCAACGACCAGAGCGGCGGTGGAACCGCCGCCGGCAGCGATTCGGGCAACGGAACGAAGAGGAGGAAGTCACGGTGGGCTGACGACGATCCGAAACCGGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCCGAGATTCAATCTTTGAATAGTAGGTTACTCGAGATTAGCAGAATGTTGCAATCCGGTTTGCCCTTAGATGAGCGCCCTGAAGGTGCTCGATCCCCTTCACCTGAACCTATATATGATAACATGGGAATTAGGATTAATACTAGAGAGTATCGTGCTCGTGAGAGGTTGCAGAAAGAGAGGCAAGAGATTATATCTCAGATTATTAAGAAGAACCCAGCTTTTAAGCCCCCAGCTGATTATAGGCCACCAAAGCTTCAGAAGAAGCTTTACATACCAATGAAGGAATACCCTGGTTACAACTTCATCGGGCTGATTATTGGGCCCAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAGATTGTGATTCGCGGTAAAGGATCAGTGAAGGAAGGTAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTTTTAGTAGAGGCAGAGACTCAGGAATCGCTTGATGCTGCTGCTGGAATGGTGGAGAAGCTGTTGCAACCCGTCGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCAGCCTTAAATGGGACGATTAGGGATGAAGAATATTGCCGATTGTGTGGCGAACCTGGTCATCGACAATATGCATGTCCTACAAGGACTTCGACTTTTAAGAGCGAAGTGGTATGTAAACATTGTGGGGATGGTGGACATCCAAGCATAGATTGCCCGGTGAAGGGTGCTACCGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGTTCAGTACCTGAATCTGCAACAAAGCAAACCAGTACATTGGCAATTGGTCCAGGCAATTCTGGAACTAATGCCCCTTGGACTAACAATTCTGGCTCGACTGGTAGTTCACCACACCCTGGCTTAGGGTCTAGTGCTGTTAAAAAGGAAATCGATGATACAAATTTGTATATTGGGTATTTGCCACCCACTCTTGATGACGATGGCCTGATCCAACTGTTTCAGCAATTTGGTGAGATTGTCATGGCTAAAGTTATTAAGGACCGAGTGTCGGGTCTAAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATTCAAATGGCAAATAATGCTATTGCGGCTATGAATGGTTATCGCCTTGAGGGCCGGACCATTGCAGTGAGAGTTGCCGGTAGGCCTCCTCAGCCTGTTGTACCTCCTGGTCCACCGGCCTCTGCTGTGCCCACCTATCCTGTCCCAAGCCAGCCAGTTGGTGCCTATCCATCCCAGCAATATGCCACTGGTGGTCCTCTTGGGAGTGCTCCCCTGGTGAGCTACGGTGGTACACCAGTTCCATGGGGACCTCCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCTCCTGGATCAACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCACCTGTCCAAACAGGTCCTCCTGGTGCTCCATCCCAGCCTGCAACCACTAGTGAAGCTCAGCAGAGTTACCCTCCTGGGGTGCAGTCTGACAATAGTACCACTACACAGTCTGTACCATCCATGTATGGGAACACAGTGCCTTCAATGCCACCAGCACCTCAACCTACATATCCTGCATCATATGGCTATCCACCTTACTACAGTGCAGTTCCTCTGCCACCTCCTCCTCCTGCTCCTGCTCCTACTTCAGACCAGTCCCACAGCATGATGAATGTGCCTTGGGCCAGTAATCCTCCTGTGCCTCCTCCTCCATCATCTGCAGAGAAGACAGCATATGGTGCGGATCAATCGCAGAGCATTGGAAATGTGCCTTGGGCCACAAATCCACCAGTGCCTCCTCCTCCTCCTTCATCAGCTGAGAAGACGTCATATGGTGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAGTGA | 2328 | 0.5103 | MLPTPTAPSRATTRNPPENGQDGGGTNSHPQIAKPLLSENGLTGTTTRSGTTDKDQSGGEEETTSRRRRRSRWDPQPESNDQSGGGTAAGSDSGNGTKRRKSRWADDDPKPVIQLPDFMGGIEFDPEIQSLNSRLLEISRMLQSGLPLDERPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGPGNSGTNAPWTNNSGSTGSSPHPGLGSSAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADIQMANNAIAAMNGYRLEGRTIAVRVAGRPPQPVVPPGPPASAVPTYPVPSQPVGAYPSQQYATGGPLGSAPLVSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGAPSQPATTSEAQQSYPPGVQSDNSTTTQSVPSMYGNTVPSMPPAPQPTYPASYGYPPYYSAVPLPPPPPAPAPTSDQSHSMMNVPWASNPPVPPPPSSAEKTAYGADQSQSIGNVPWATNPPVPPPPPSSAEKTSYGADSEYEKFMAEMK* | 776 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod04g0582 | 775 | PANTHER | RNA-BINDING PROTEIN RELATED | 718 | 775 | IPR045071 | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 54 | 76 | - | - | |
| Dod04g0582 | 775 | PANTHER | BRANCHPOINT-BRIDGING PROTEIN-LIKE | 21 | 732 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 96 | 110 | - | - | |
| Dod04g0582 | 775 | Gene3D | K Homology domain, type 1 | 208 | 330 | IPR036612 | GO:0003723 | |
| Dod04g0582 | 775 | Gene3D | - | 331 | 384 | - | - | |
| Dod04g0582 | 775 | SUPERFAMILY | Retrovirus zinc finger-like domains | 329 | 375 | IPR036875 | GO:0003676|GO:0008270 | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 406 | 438 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 77 | 95 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 686 | 764 | - | - | |
| Dod04g0582 | 775 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 211 | 337 | IPR036612 | GO:0003723 | |
| Dod04g0582 | 775 | ProSiteProfiles | Type-1 KH domain profile. | 226 | 298 | - | - | |
| Dod04g0582 | 775 | Pfam | KH domain | 226 | 274 | IPR004088 | GO:0003723 | |
| Dod04g0582 | 775 | Gene3D | - | 125 | 203 | - | - | |
| Dod04g0582 | 775 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 450 | 519 | IPR000504 | GO:0003723 | |
| Dod04g0582 | 775 | Pfam | Splicing factor 1 helix-hairpin domain | 100 | 207 | IPR032570 | - | |
| Dod04g0582 | 775 | SMART | kh_6 | 211 | 303 | IPR004087 | GO:0003676 | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 599 | 625 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 256 | 276 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 626 | 661 | - | - | |
| Dod04g0582 | 775 | SMART | rrm1_1 | 449 | 522 | IPR000504 | GO:0003723 | |
| Dod04g0582 | 775 | SUPERFAMILY | RNA-binding domain, RBD | 444 | 536 | IPR035979 | GO:0003676 | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 406 | 435 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
| Dod04g0582 | 775 | ProSiteProfiles | Zinc finger CCHC-type profile. | 333 | 347 | IPR001878 | GO:0003676|GO:0008270 | |
| Dod04g0582 | 775 | ProSiteProfiles | Zinc finger CCHC-type profile. | 359 | 373 | IPR001878 | GO:0003676|GO:0008270 | |
| Dod04g0582 | 775 | PANTHER | RNA-BINDING PROTEIN RELATED | 21 | 732 | IPR045071 | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 147 | 166 | - | - | |
| Dod04g0582 | 775 | CDD | SF1_like-KH | 212 | 328 | - | - | |
| Dod04g0582 | 775 | Gene3D | - | 416 | 530 | IPR012677 | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 727 | 742 | - | - | |
| Dod04g0582 | 775 | PANTHER | BRANCHPOINT-BRIDGING PROTEIN-LIKE | 718 | 775 | - | - | |
| Dod04g0582 | 775 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 448 | 526 | IPR000504 | GO:0003723 | |
| Dod04g0582 | 775 | MobiDBLite | consensus disorder prediction | 599 | 667 | - | - | |
| Dod04g0582 | 775 | SMART | c2hcfinal6 | 358 | 374 | IPR001878 | GO:0003676|GO:0008270 | |
| Dod04g0582 | 775 | SMART | c2hcfinal6 | 332 | 348 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod04g0582 | Dod-Chr4 | 8342247 | 8348171 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod04g0582 | 448 | 639 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 28.293 | 5.64e-14 | 73.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod04g0582 | K13095 | - | gmx:100800982 | 1112.06 |