Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0577 ATGCTTCCCTTTACGAGACTCTACGGGTTCGAAAGCAACACAAGGCATCTTCAGCCCACTGAATCCGACGGTGGGAGATCAAAGGTGGGGATGAGGAAATCGAAATCAACGGCATCAGAATACGAGAATCACAGGGAAGCTGAGAGGAGACGCCGCCACCGAATCAACGCCCATCTCGCCACCCTTCGCTCTCTCCTCCCCAACACCAAGGCCATTATTCCCCAACTCTCATTATCGGATAAGGCATCGTTGCTCGGGAAGGTAGCAAAGCTCGTGAAAGAGCTGAGCAAACGGGTCGACGACGTGGGTCGTCACCATGACGAAGCCGGTTCGGTTCGGTATTTCGGGAACGAACCGGGGGAGTTGGACGAGGAAAAGGAACCGATGCTAATGAAGTCCACGGTGTGTTGCGATGACCGGCCTGGGTTGAACCGGGACATAACGCAGGCAATCCATTCGGTTCGGGCGCAGATTGTGACGGTTGGTGGCCTGACCAAGATTGTTGTGGTGATGCGGTGGCCTGTTGGTGATGATGGTGCAAGAAAAGAGGGGGAGATTGGTGCAGTGGAACGGGCTTTGAAGGCCGCGGATTCAGAATCGGGCTTTGGTGGGCTCTGA 618 0.5518 MLPFTRLYGFESNTRHLQPTESDGGRSKVGMRKSKSTASEYENHREAERRRRHRINAHLATLRSLLPNTKAIIPQLSLSDKASLLGKVAKLVKELSKRVDDVGRHHDEAGSVRYFGNEPGELDEEKEPMLMKSTVCCDDRPGLNRDITQAIHSVRAQIVTVGGLTKIVVVMRWPVGDDGARKEGEIGAVERALKAADSESGFGGL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0577 205 PANTHER TRANSCRIPTION FACTOR BHLH30 30 196 IPR045847 GO:0003700|GO:0006355
Dod04g0577 205 Gene3D - 33 107 IPR036638 GO:0046983
Dod04g0577 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 107 IPR036638 GO:0046983
Dod04g0577 205 MobiDBLite consensus disorder prediction 26 49 - -
Dod04g0577 205 Pfam Helix-loop-helix DNA-binding domain 42 95 IPR011598 GO:0046983
Dod04g0577 205 SMART finulus 45 101 IPR011598 GO:0046983
Dod04g0577 205 MobiDBLite consensus disorder prediction 13 51 - -
Dod04g0577 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 95 IPR011598 GO:0046983
Dod04g0577 205 PANTHER OS09G0463900 PROTEIN 30 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0577 Dod-Chr4 8274530 8275274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0577 30 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 29.714 2.82e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g0577 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0577 - - ccaj:109815026 152.14