Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0574 ATGTACTTATCAGAAAAACCCCGCCCCATCGATTTCTACAAAGAGGAAGGGATGATGGAGGTTGTGTCGAACGGCGGCGACCTCCCTCCTCCGCCACCTCCTCCTCCTGGGGCGGCGATGATGGTGGGGGAGAGCAGCGGGGAGGAGCCGGAACTGGAAGTAAAGGCTCCGAAGAAGCGGGCGGAGACGTGGGTACAGGAGGAGACGCGAAGCCTGATTGCTTTGCGGCGTGAGATGGACGGCGTGTTCAACACTTCCAAGTCGAACAAGCACCTTTGGGAGCAAATATCGTGCAAGATGAGGGAGAAAGGTTTTGATAGGTCTCCGACCATGTGCACCGACAAGTGGAGGAACCTGCTCAAGGAATTCAAGAAGGCAAGGCACCTGGATAGAGGCGGAGGAGGAGGGACTAGTAGTGGTTCCGCTAAGATGTCTTATTACAAGGAGATTGACGAGATCTTGAGGGAGAGGAACAAGAGTGTGCAGTATAAGACCCCTACCACTTCCCCGCCTCCTCCTCCTCCTCCTACTACTACCACCAAAGTTGACTCCTTTATGCAGTTTGCTGATAAGGGTATCGAGGATACCAGCATCTCTTTCGGGCCTGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCGCAGCTGATGCTGTTGCAGCAAGCGGCGTTCCCCCTTGGAATTGGAGAGAAACTCCTAGCAATGGCGGGGAAAGTCAGTCATGCTGTGGAAGGGTAATATCAGTCAAATGGTGCGATTATACAAGACGGATAGGTATTGATGGCTCTTCAGAAGCCATCAAGGAGGCAATTAGGGCTGCATTTCGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGAGCAAATAATCAGAAGTATTGACCGTGACATGCCTTTAGGAAATTACACTCTTCACCTTGATGAAGGAATGGCTATTAAAGTATGCCTCTATGATGAGTCTGACCATATCTCTCTACACACCGAAGAGAAGATCTTTTACACTGAAGATGATTACCGCGATTTTCTGAGTCGACGGGCATGGACAAGTCTAAGGGAATTCGATGGCTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATATCGCGGTGTGAGTTGA 1173 0.4962 MYLSEKPRPIDFYKEEGMMEVVSNGGDLPPPPPPPPGAAMMVGESSGEEPELEVKAPKKRAETWVQEETRSLIALRREMDGVFNTSKSNKHLWEQISCKMREKGFDRSPTMCTDKWRNLLKEFKKARHLDRGGGGGTSSGSAKMSYYKEIDEILRERNKSVQYKTPTTSPPPPPPPTTTTKVDSFMQFADKGIEDTSISFGPVEATGRPTLNLERSLDHDGHPLAITAADAVAASGVPPWNWRETPSNGGESQSCCGRVISVKWCDYTRRIGIDGSSEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPLGNYTLHLDEGMAIKVCLYDESDHISLHTEEKIFYTEDDYRDFLSRRAWTSLREFDGYRNIDNMDDLRPGAIYRGVS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0574 390 Gene3D - 64 126 - -
Dod04g0574 390 SMART sant 60 122 IPR001005 -
Dod04g0574 390 CDD GT1 62 127 - -
Dod04g0574 390 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 8 389 - -
Dod04g0574 390 MobiDBLite consensus disorder prediction 162 181 - -
Dod04g0574 390 MobiDBLite consensus disorder prediction 21 59 - -
Dod04g0574 390 PANTHER - 8 389 - -
Dod04g0574 390 ProSiteProfiles Myb-like domain profile. 56 120 IPR001005 -
Dod04g0574 390 Pfam Myb/SANT-like DNA-binding domain 63 153 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0574 Dod-Chr4 8252504 8257472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0574 18 389 Trihelix Transcription Factor Family AT3G25990 66.578 1.79e-180 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dod04g0574 Myb_DNA-bind_4 1.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0574 - - ccaj:109807736 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0574 04 8252504 8257472 Dod04g0574 04 8252504 8257472 ECH