Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0560 ATGGACAATGGTTGTTTCTCTTCCCCTAGACGTGATGCTTTTCCTGCAGGTCTCAGAGTCCTTGTTGTTGATGATGATCCAACATGGCTCAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACTACATGTTGTTTGGCAAGACATGCTCTAAACTTGCTTCGCGAAAGGAAAGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAGACAAGCAGGGTGATGAAAGGAGTTCAACACGGAGCTTGTGATTATCTGCTTAAGCCGATAAGGATGAAGGAACTGCGAAACATATGGCAACATGTCTTTAGGAAAAGGATACATGAGGCAAGAGAATTTGAAAGTCTTGAGGGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGCAGTCCGATGATGGGAACCTGTTTGCTGTTGAAGATATGACATCAACCAAGAAAAGAAAAGATGTAGATAACAAACTCGATGACAAAGAATTGGTGGATCCATCTTCCACCAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGACAAAGTTGGTCCGAAGAAAATACTAGATTTGATGAATGTCCCTTGGCTGACTAGAGAAAATGTTGCGAGCCACCTGCAGAAATATCGGCTTTACTTGAGTAGGCTTCAGAAAGAAAACGATCAGAAATCTTCCTCAAGTGGAATGAAGCATTCAGATTTACTTTCAAAAGATCTAGGAAGTTTTGGAGTTCAGAACTCCGCGAACAAGAACCAAACTGATGTTTCAATTGACAGCTACAACTATTCAGATGGAACAGTACAACTGCAGAACATGGAAGCTAAAGGTCATGAAGGTGATCACAAGGGGATTGTTTCACAGCCCCCCACCATAGAAAAAGGAAGAACTTTGACTGGTAATAACATTACTGATACGAAGATGATAAAGAGTTTACAGATGGGCCTTAATCAACCTTTTGACCCTCTAGAGTCAGAAGGAAACCATGCAGCAGTGCTTGATTGTACCATGCCAACACAGTACTCTTGGACTGAAGTTCCAGAAATGCAACTCAAAGAACACAAATCACTTGCTCAATCAGAGGATAACTTCAACCAGTTTCCATTACATGGTAAGCAGCAGCACATCCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCACTCCATCCTTGACAGATGAAGAGGTTGTTGCATGTATAGAAACAAAACCTCTGTACTCTGATTGCAAGCACGAATACAACAGCTCTGTGGGTTCAATAGGGAGTGCAGTTGACACCTTTCCTATTGAACCTGGAAGCCTTATGATGAACGATCAATCTTCAGAACCCATTTCCACTCCAAACTTGGGCTTGAAAACTCAAGCATCTACTCTCAGTTGCATTTCTGATATGGAACTTTACCAAAGAAGCCTACTTCTAGGAGGCGAGGCAGCGGCTTCTTTACCTTTGGATGACGACATGCATTTCTGTTGGCCACAAGGTGAATGCTCTAACATGAACTTGAGTCTGCAGAACATGTCAGGGTATTATGATCCAGGGCTATTTGCAGAAATTCCAACCCACTATTATGATTCAGCAGATTATTCAGTTATAGATCAAGGTCTATTTATAGCATGA 1746 0.4135 MDNGCFSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESLEGFESMHLMRNGSEQSDDGNLFAVEDMTSTKKRKDVDNKLDDKELVDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGMKHSDLLSKDLGSFGVQNSANKNQTDVSIDSYNYSDGTVQLQNMEAKGHEGDHKGIVSQPPTIEKGRTLTGNNITDTKMIKSLQMGLNQPFDPLESEGNHAAVLDCTMPTQYSWTEVPEMQLKEHKSLAQSEDNFNQFPLHGKQQHIQVDQSQSIASISSTPSLTDEEVVACIETKPLYSDCKHEYNSSVGSIGSAVDTFPIEPGSLMMNDQSSEPISTPNLGLKTQASTLSCISDMELYQRSLLLGGEAAASLPLDDDMHFCWPQGECSNMNLSLQNMSGYYDPGLFAEIPTHYYDSADYSVIDQGLFIA* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0560 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 557 - -
Dod04g0560 581 SMART REC_2 18 130 IPR001789 GO:0000160
Dod04g0560 581 Gene3D - 18 200 - -
Dod04g0560 581 CDD REC_typeB_ARR-like 20 134 - -
Dod04g0560 581 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Dod04g0560 581 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Dod04g0560 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 557 IPR045279 GO:0009736
Dod04g0560 581 Gene3D - 201 259 - -
Dod04g0560 581 MobiDBLite consensus disorder prediction 318 340 - -
Dod04g0560 581 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Dod04g0560 581 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Dod04g0560 581 SUPERFAMILY CheY-like 17 151 IPR011006 -
Dod04g0560 581 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0560 Dod-Chr4 7991852 7996622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0560 12 266 Response Regulator Gene Family AT2G25180 56.202 6.37e-84 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod04g0560 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0560 - K14491 gmx:100797421 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0560 04 7991852 7996622 Dod04g0560 04 7991852 7996622 ECH
Dod04g0560 04 7991852 7996622 Dod04g1993 04 43391963 43395850 PCT