Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0559 ATGTGGCAAAGGCAGGCCAATAGTTCTTCTTACAGTGATTCTATAGAGGCTCTCGAAGCTGATATCCAACATGCCAATACCATGGCAGCATCACTCCCCCGTGATTATGGTGGGGACTATATTCAGATGAAATTATCCTACGGCTCTTTTGCTCCTCTTTTCTTGTACTTGATCCAATGGTTTGATTTTAGTTGTGCATATGCTCTGCCAACGTATTTGGGATTACTCCACATCCTTATCTTCAATGTATACGCTGATGGAATGCCATCTATTTCCACAAAAGAAAGGAAAGCCACAATAAAAGAATTTTATGCCGTAATATACCCTTCATTACGCCTACTTGAAGGCGAGTTTAGTGCGCATATAAGTAACGATCAAAGTAGCAGTTGCACAGAAGTTGTGACCAGAAAGAGGCTTGAAAAGCTTCTTGATAAAGATCTAGAGGGAGAGGAGGAATGTGGCATATGCATGGAGAACAGCATGAAGATGGTACTGCCAAATTGTGGCCATTCATTGTGCATTGGCTGCTTCCATGATTGGTATATGAGATCAGAATCATGCCCATTTTGCCGCGGCAGTCTCAGGAGAGTCACTCCAAGAGATTTATGGGAAGTTATTGGCAACAGTGATGTGGTTGACAGGGCTACCATTGCAAAGGAAAATTTAAGACGTTTATACCTTTACATGGAAGCCCTGCCTCAAATTGTTCCTGAAACACATGTGTACACATTCAATTATATGCTATAA 747 0.4163 MWQRQANSSSYSDSIEALEADIQHANTMAASLPRDYGGDYIQMKLSYGSFAPLFLYLIQWFDFSCAYALPTYLGLLHILIFNVYADGMPSISTKERKATIKEFYAVIYPSLRLLEGEFSAHISNDQSSSCTEVVTRKRLEKLLDKDLEGEEECGICMENSMKMVLPNCGHSLCIGCFHDWYMRSESCPFCRGSLRRVTPRDLWEVIGNSDVVDRATIAKENLRRLYLYMEALPQIVPETHVYTFNYML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0559 248 SMART ring_2 153 190 IPR001841 -
Dod04g0559 248 PANTHER RING FINGER PROTEIN 41, 151 4 248 - -
Dod04g0559 248 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 4 248 - -
Dod04g0559 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 200 IPR013083 -
Dod04g0559 248 ProSiteProfiles Zinc finger RING-type profile. 153 191 IPR001841 -
Dod04g0559 248 SUPERFAMILY RING/U-box 152 197 - -
Dod04g0559 248 Pfam Zinc finger, C3HC4 type (RING finger) 150 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0559 Dod-Chr4 7974485 7979557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0559 145 230 C3H Transcription Factor Family AT2G20030 32.258 1.26e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0559 - - gmx:100805014 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0559 04 7974485 7979557 Dod04g0559 04 7974485 7979557 ECH