Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0551 ATGAGACTAGATCCCATTTTTCCGGGACAGAGATCGGATGAAGTGCTTTTAAATCCTTTGACTTTGAGCTCATTACAACACGAGACAATGGAGTGGCTTGATATCTTCATGGTGGCAACCAGTGCCTTAGGCTTCATCATTCTGTGCAGAACTCTCTTCAAATTTCTCAAGTGGGTTTGGGCTATGTTCTTGAGGCCACCAAAGAAACTCAAGGACTATGGCTCATGGGCTATAATTACTGGCTCCACTGATGGAATTGGAAAAGCCATGGCCTTTGAGTTAGCATCTGAGGGACTCAACCTTCTCTTGGTTGGTAGAAACCCTCTAAAACTTGAGGCCACGTCCAAAGAGATAAGAGATAAAAACAGTGGCCGTGTTGAAGTCAAGTGTGTGGTCATAGACTTTGAGAAAGATGATGGAGGGGAAATAACAAAAAGGGTTGAGGAAGCTATAGATGGTTTAGATGTGGGCATGCTGGTTAACAATGCAGGTTTGGCATACCCTTATGCCAGGTTCTTTCATGAGGTTGATTCTGATCTGATGAATGCTATCATAAAAGTGAATGTGGAGGGCACAACTTGGATCACAAAGGCAGTGATTCCAAGCATGCTCAAGAAGAAGAAGGGAGCAATCATAAACATTGGCTCTGGTTCCACTGTTGTGCTTCCTTCTTATCCCTTAGTTACCCTCTATTCTGCTTCAAAAGGATATCTTGCAATGTTCTCGAGATGCATTAATTTGGAATACAAGCATCAAGGAATTGACATCCAGTGTCAGGTTCCATTATTTGTGTCAACGAAGATGACAAAGATGAGAGCTTCCTTTTTTGTTCCAACGCCAGAAACGTATAGCAAAACATGCACAAGATGGGTAGGCTACGAAAGTGTGGTTGTTCCTTACTTCCTCCACTCTCTGCAGTGGCTTGTCATAGGGGCAATTCCTGAGGCACTCGTGGATTCCTATATGTTGCGTTATTTTCTTTACTGGCGATGTAGAGGATTCTCAAAGGACTCCAAAATTAAGGCATTAGCTGCATCTAAGTCCGAAAAGTAA 1053 0.4292 MRLDPIFPGQRSDEVLLNPLTLSSLQHETMEWLDIFMVATSALGFIILCRTLFKFLKWVWAMFLRPPKKLKDYGSWAIITGSTDGIGKAMAFELASEGLNLLLVGRNPLKLEATSKEIRDKNSGRVEVKCVVIDFEKDDGGEITKRVEEAIDGLDVGMLVNNAGLAYPYARFFHEVDSDLMNAIIKVNVEGTTWITKAVIPSMLKKKKGAIINIGSGSTVVLPSYPLVTLYSASKGYLAMFSRCINLEYKHQGIDIQCQVPLFVSTKMTKMRASFFVPTPETYSKTCTRWVGYESVVVPYFLHSLQWLVIGAIPEALVDSYMLRYFLYWRCRGFSKDSKIKALAASKSEK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0551 350 PIRSF 11-beta-HSD1 27 336 - -
Dod04g0551 350 Gene3D - 70 301 - -
Dod04g0551 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 231 250 IPR002347 -
Dod04g0551 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 165 IPR002347 -
Dod04g0551 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 IPR002347 -
Dod04g0551 350 PRINTS Glucose/ribitol dehydrogenase family signature 231 250 IPR002347 -
Dod04g0551 350 PRINTS Glucose/ribitol dehydrogenase family signature 154 165 IPR002347 -
Dod04g0551 350 PRINTS Glucose/ribitol dehydrogenase family signature 203 219 IPR002347 -
Dod04g0551 350 PRINTS Glucose/ribitol dehydrogenase family signature 252 269 IPR002347 -
Dod04g0551 350 PRINTS Glucose/ribitol dehydrogenase family signature 76 93 IPR002347 -
Dod04g0551 350 CDD 17beta-HSD1_like_SDR_c 74 315 - -
Dod04g0551 350 PANTHER RH59310P 32 340 - -
Dod04g0551 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 336 IPR036291 -
Dod04g0551 350 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 32 340 - -
Dod04g0551 350 Pfam short chain dehydrogenase 76 271 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0551 Dod-Chr4 7898314 7901022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0551 32 338 Lipid Metabolism Gene Families AT1G67730 53.074 3.54e-116 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0551 K10251 - gmx:100816067 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0551 04 7898314 7901022 Dod04g0551 04 7898314 7901022 ECH
Dod04g2279 04 46685541 46689477 Dod04g0551 04 7898314 7901022 PCT