Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0530 ATGGGAGAAACCGGTATCATTGTCCGGTTCCCTGGAAACTTAGACCCCAGAGCCCAGGAGTTTAGACCCACTCACACTCCTCTCCATTCACCGGTAACCGTCTTCCCCCTTCCCCACCCCTACGCCCAACCCCCCTCCCCTTACCCCTACCCTTACCTGCCCTCCCCAGGGGTACTGCCCTTCCACGACGCTGCTCTCTCCGCCGTCGCCGTCCCCTTCGCTCACTTCTCCGCCCCTGCTCCCTCCGCCGCCTACGCCGTCCCTCCGCCGCCGCTTCCGCCGCCTCGTCTCTCCACGTCACCCACCCGGTCGTTACTCCTGAGCCCTCTCCCCTCCGACCTGGCCGTCAGCGAATCCTCCCTTAGGCGCGAATTAGAAGTGTTCGGCGACGTTAGAGGCGTGCAGATGGAAGCTCTCCGCGATGGAATCGTGACCGTCCATTTTTACGACCTCAGGGACGCCGACACGGCGCTAACGTCGATTCGCCATCAGCACATGCAGCACCAGACAAGGCTGCGCAACCACTACGCCTCCGTTTCCAATTCGAGAGCCTCATTTTCCCACACCGCCGGAGCGCCGCCACCGCCGCCGCTTCCGCCGCCTGCTCGCGGCCTCGTCGCCGGTAGAGCCGTGTGGGCGCAGTACGTCCTCCCGGCGTGCAACGCCGTCACCGACGGCCATAACCAAGGTACCGTTGTCGTCTTCAACTTGGACTCGGAGGTTTCCGCTGAGAATCTTCGACGCGTTTTCGAGGCTTTCGGTCCCGTGAAGGAATTGAGAGATACACCGTCGAAAAAGTACCAGAGGTTCGTGGAGTTCTATGATGTTAGAGACGCGGCGAAGGCTTTGAAACAAATGAACGGCAAGGAGATTGATGGGAAGGAGGTTGTTATTGAGTTTAGTAGACCTGGTGGTCACAACAGAAAGTTTTTTCATTCCTCCGCTGCAGCTTCTTCTACCAAAAAGCCTTTCAACTTGAACGTTCCACCATCTCCTCTACCACCACCTTCGCACTTGTACACTTCAACGCGCAAATACTCGCGTCGTTTTGGTGCCGATGCTGCGAGGTCCTACCAGCATTCTTCTTCTCACACCCAATTGCCGTTTAGGAAGTGTTCGAGCGGTGGCGGCAAGGGAAGCCCGAATGACGTTGCGGATGTTGGGCCCGTTGAGGCCGCAATGGGCTTGAGCTTTGAGACTGGTAACGGGGCTGAGGAGCAGCGTCATTCAGACGGGCCTCCGAGAAGGAATTCCGTTAGGAAAGAGAACAGTGAGTCCGCTGAGGAAAAGGCGAAGATACAACAAATCGTTAGAAACAGGCACTGGAAGGGGAAACAAGCGAAGAAGCATGAAACAAGGTATCTGATTAGAGATGATGACATTGTAGAGTCCAGTTCCAGAGATCCTCGAACCACTGTGATGATCAAGAACATTCCCAACAAGTATAGTCAGAAGTTACTATTAAATATGCTGGACAACCATTGCATACACTGTAACGAGCAAATTGGCGACAACAATGAGCAGCCATTATCTTGCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGGTATGGGTTTGTGAACATGACATCTCCGGAAGCGACCTTGCGACTCTACAAGGCCTTTCATCTTCAACATTGGGAGGTATTCAATTCCAGGAAAATTTGCGAAGTTACCTATGCTAGAGTTCAGGGTTTGGAAGCGTTGAAAGAGCACTTCAGGAACTCAAAGTTCCCATGCGAGATGGACCATTACCTGCCAGTGGTGTTTTCACCGCCTCGTGATGGGAGGGTACTGACGGAGCCACTTCCAATAGCTGGTAATAACAAGCAACATCAAGGCATTCCAAACCGTGATGAGATGGAGGGACATGAAGACAGGGAAAGCGCTAATTCTGCATCTGCTTGCGGTGACGTGCTTAGCAGCAGCCAAAGCGGCGGCGTGTGTGATGATGACACTAGTTAA 1983 0.5406 MGETGIIVRFPGNLDPRAQEFRPTHTPLHSPVTVFPLPHPYAQPPSPYPYPYLPSPGVLPFHDAALSAVAVPFAHFSAPAPSAAYAVPPPPLPPPRLSTSPTRSLLLSPLPSDLAVSESSLRRELEVFGDVRGVQMEALRDGIVTVHFYDLRDADTALTSIRHQHMQHQTRLRNHYASVSNSRASFSHTAGAPPPPPLPPPARGLVAGRAVWAQYVLPACNAVTDGHNQGTVVVFNLDSEVSAENLRRVFEAFGPVKELRDTPSKKYQRFVEFYDVRDAAKALKQMNGKEIDGKEVVIEFSRPGGHNRKFFHSSAAASSTKKPFNLNVPPSPLPPPSHLYTSTRKYSRRFGADAARSYQHSSSHTQLPFRKCSSGGGKGSPNDVADVGPVEAAMGLSFETGNGAEEQRHSDGPPRRNSVRKENSESAEEKAKIQQIVRNRHWKGKQAKKHETRYLIRDDDIVESSSRDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDNNEQPLSCYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFRNSKFPCEMDHYLPVVFSPPRDGRVLTEPLPIAGNNKQHQGIPNRDEMEGHEDRESANSASACGDVLSSSQSGGVCDDDTS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0530 660 SMART rrm1_1 104 173 IPR000504 GO:0003723
Dod04g0530 660 SMART rrm1_1 231 299 IPR000504 GO:0003723
Dod04g0530 660 Pfam RNA recognition motif 2 470 580 IPR007201 -
Dod04g0530 660 MobiDBLite consensus disorder prediction 404 431 - -
Dod04g0530 660 MobiDBLite consensus disorder prediction 354 387 - -
Dod04g0530 660 Gene3D - 224 310 IPR012677 -
Dod04g0530 660 SUPERFAMILY RNA-binding domain, RBD 230 548 IPR035979 GO:0003676
Dod04g0530 660 MobiDBLite consensus disorder prediction 621 637 - -
Dod04g0530 660 MobiDBLite consensus disorder prediction 400 431 - -
Dod04g0530 660 MobiDBLite consensus disorder prediction 356 370 - -
Dod04g0530 660 MobiDBLite consensus disorder prediction 640 660 - -
Dod04g0530 660 SUPERFAMILY RNA-binding domain, RBD 82 168 IPR035979 GO:0003676
Dod04g0530 660 PANTHER RNA BINDING PROTEIN 42 652 - -
Dod04g0530 660 PANTHER TERMINAL EAR1-LIKE 1 42 652 - -
Dod04g0530 660 CDD RRM3_EAR1_like 470 571 IPR034458 -
Dod04g0530 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 303 IPR000504 GO:0003723
Dod04g0530 660 MobiDBLite consensus disorder prediction 605 660 - -
Dod04g0530 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 296 IPR000504 GO:0003723
Dod04g0530 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 179 IPR000504 GO:0003723
Dod04g0530 660 Gene3D - 398 578 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0530 Dod-Chr4 7616043 7619660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0530 225 302 Eukaryotic Initiation Factors Gene Family AT2G23350 35.366 4.83e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0530 - - adu:107469016 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0530 04 7616043 7619660 Dod04g0530 04 7616043 7619660 ECH