Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0528 ATGCATGCTGCTAATGATATGGGGAACAAAGGTGGATTCTTTCGTTATGCAGATGGCGTTGACAAGTTGCTATTACTCTTTGGGACTTTGGCTTGCGTTGGAGATGGTCTACAAACCCCTATCACAATGCTTGTTCTTGGTGGTTTGATTGATGATTATGCAAATGGATCTGAAGATTCTGTGCCTAAGCATACTATAGACAAGTACGCTGTCAAGTTGCTGTGTATTGCCATAGGAGTTGCTCTATGTTCTTTTGTTGAAGGAGTATGTTGGACAAGAATTGCAGAAAGGCAAACTTCCCGCATGAGAACTGAATATCTCAGATCAATCCTTAGACAAGAAGTTGGTTTCTTCGACAAGCAAATGGACACTAACTCTTCCAAAACCTTCCAAGTAATTGCCACCATAACTTCAGATGCTCAAACAATTCAAGACACCATAGCTGATAAGGTGCCCAGTTGTCTGGGCCAGCTCTCCTCATTCTTCTCTAGCTTTATAGTGGGGCTCTTCCTTTCTTGGAGACTTGTTCTGGCTGCTTTTCCATTCTCAATTATGATGATCATGCCAGCAATCATATTTGGAAAGACTCTGAAAGATCTGGGAGGTAAAATGAAAGATGCATATGGAGTTGCAGGTAGCATAGTAGAACAAGCAGTGTCATCAATTCGAACAGTTTATTCATATGTTGGTGAGAAGCAAACACTAAAAAGGTTCAGCTCTGCTCTTGAAAAGAGTATGGAGCTAGGCATAAAGCAAGGCCTAACAAAGGGAGTGGTCATTGGGAGCCTTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGGAGCGTTCTGGTCAGAACAAAAGGAGATAGAGGGGGCCCTGTGTTTGCTGCTGAAATATGTATGATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGCTTCCTTATTAGAAGCAACAGTAGCTGCTACCCGAATTTTTGAGATGATTGATCGGGTGCCAACTATAAACACTTACAAGGAAAAGGCAAAGATCTTAAGCCATGTGAGAGGAGAGATCACATTCAAAGATGTTGACTTTACTTACCCATCAAGACCAGATACTCCAATTCTCCAAGGACTCAATTTGACAGTGCCAGCAGGTAAAACAATAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCCACTATTGTCTCTTTGATCGAAAGATTCTATGATCCTGTGTATGGTGAGATATTGCTTGATGGATATGATATAAAGAGTCTCCAACTTAAGTGGTTAAGGTCCCATATGGGGCTAGTTAATCAAGAGCCAATTCTTTTTGCAACATCCATAAAGGAGAACATTTTGTTTGGCAAGGAAGGAGCTTCAATGGAAGCTATTGTAAATGCAACAAAGGCTGCAAATGCACATGATTTCATTGTTAAACTTCCTGATGGATATGAAACTCAAGTAGGACAGCTTGGGGCTCAGTTGTCTGGAGGACAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATTCGAGACCCTAAAATCCTTCTACTTGATGAAGCCACTAGTGCCTTGGATTCACAGTCTGAAAGTATAGTGCAAGATGCACTTGATTTGGCATCCAAAGGCAGGACAACAATAATTATAGCTCATCGCTTATCCACAATTCGAAAGGTGGATTCAATAGTGGTTCTACAATCAGGAAGAGTGATCGAATGTGGTTCACATGATGAGCTACTCAGACTAAACAATGGACAAGGTGGTACTTATAGCAGAATGCTACAACTACAACAAACAAGTCAAATTGAAGATGCACTGCATCAAGTAAACAAGAGCCCCCAAGTTATGTTAAGTCCAAAATCAAGTAGGCCAAGTACCCCAACTCATCATGCATTTAGCCCTGCACAACCATTTAGCACCATATACTCAATAAGTGTCACAGGGTCCACCTTTGATGACTGTAGTAGTGAGAATTTTAGTAAATCTTCCCAATCAAATTTCTCACAATGGCGTTTACTAAGGATGAATGCACCTGAGTGGAAGTATGCTATGCTCGGGTGTCTAGGTGCAATTGGCTCTGGAATATGCCAACCATTTTATTCTTATTGCTTGGGAATAGTTGCTTCTGTATACTTCATAACAGACCACTCTCGCATCATCTCAGAAATCAGGTTTTACTCATCCATCTTCTGCATCATAGCTATTGTCAACTTCATTTCAAGCCTTGTTCAACACTATAATTTCGCCATCATGGGAGAGCATTTGTTAAAAAGGGTGCGAGAAAATTTGCTGGAGAAGGTGATGACCTTTGAGATAGGATGGTTTGATCAAGAGGAGAACACAAGTGCAGCAATCTGTGCACGTTTGGCAGCTGATGCAAACTTGGTTAGGTCCCTTGTTGCAGAAAGAATGTCACTACTAGTCCAAGTTTTCATCACGGCTACCCTGGCTTTTGCGCTTGGTTTAGTTGTCGCATGGAGGGTGGCTATTGTAATGATTGCTATGCAACCTTTGATCATTGCCTGTTTCTATTCAAAAAGCATTCTTATGAAAAGTATGTCAGGCAAAGCTAGAAAGGCTCAGACTGAAAGCAGTCAATTAGCAATGGAGGCAACCATCAACCACAGGACTATTGCTGCATTCTCATCTGAGAAAACGATACTGAATTTGTTCAGAAATGCTATGGAAGGCCCCCATAAAGAAAGCATAAAGCAATCATGGATTTCAGGTTCCATATTGTCAATGTCACAGTTTCTAACTACAGCATCTATAGCTTTGACTTTTTGGTATGGAGGGTGGTTACTGAATGAGAATTTAGTAGCATCAAAACACCTTTTGCAAGTTTTCCTCATCTTGATGGGAACTGGTAGACAAATTGCAGATACAGGAAGCATGACTTCTGACATAGCTAAAAGTGGGAGAGCATTTGGTTCAGTTTTTGCAATATTGGATAGGAATAGCCAAATTGAACCTGAAGATCCTAGGCTTAGGAAGTTCAAGAAGAATATGAAGGGACACATAAAATTGAAAGACATATTCTTTTCATACCCATCAAGGCCAGACCAAATGATTCTCAAGGGTCTTAGTCTTAATATTGAAGCTGGCAAGACAATAGCATTAGTGGGACAAAGTGGCTCAGGGAAATCCACTATCATTGGCCTAATTGAAAGATTTTATGACCCCGTCAATGGATCAATATCGATAGATGGTTATGACATTAGGGAGTTTGATTTGAGGAGTCTGAGATCACATATTGCACTGGTGAGTCAAGAGCCCACCCTGTTTGCAGGGACTATCCTTGACAACATTGTCTATGGTAAGAATGATGCATCAGAATATGAAATAAGAAAGGCGGCACGTCTCGCAAATGCTCATGAATTTATAAGTTCAATGAGAGATGGGTATGACACTTATTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGACAGAAGCAAAGGATTGCACTTGCTCGAGCAATACTAAAGAATCCATCAATCCTTCTCTTAGACGAGGCAACAAGTGCCCTTGATAGTGTGTCTGAGAAGCTAGTGCAAGAGGCACTAGAGAAAATTGTGGTTGGAAGAACATGTGTAGTTATAGCTCATCGTTTGTCAACAATACAAAGTGTGGACACCATAGCTGTGATTAAAAATGGGAAGGTGGTAGAGCAAGGATCACACTCAGAGTTATTGAACATTGCATCAAATGGGATTTACTACTCTTTGATTATGCTACAAGGTCACTATTCTAGTTGA 3744 0.4116 MHAANDMGNKGGFFRYADGVDKLLLLFGTLACVGDGLQTPITMLVLGGLIDDYANGSEDSVPKHTIDKYAVKLLCIAIGVALCSFVEGVCWTRIAERQTSRMRTEYLRSILRQEVGFFDKQMDTNSSKTFQVIATITSDAQTIQDTIADKVPSCLGQLSSFFSSFIVGLFLSWRLVLAAFPFSIMMIMPAIIFGKTLKDLGGKMKDAYGVAGSIVEQAVSSIRTVYSYVGEKQTLKRFSSALEKSMELGIKQGLTKGVVIGSLGLLYATWAFQSWVGSVLVRTKGDRGGPVFAAEICMIWGGLSLMSALPNLASLLEATVAATRIFEMIDRVPTINTYKEKAKILSHVRGEITFKDVDFTYPSRPDTPILQGLNLTVPAGKTIGLVGGSGSGKSTIVSLIERFYDPVYGEILLDGYDIKSLQLKWLRSHMGLVNQEPILFATSIKENILFGKEGASMEAIVNATKAANAHDFIVKLPDGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSESIVQDALDLASKGRTTIIIAHRLSTIRKVDSIVVLQSGRVIECGSHDELLRLNNGQGGTYSRMLQLQQTSQIEDALHQVNKSPQVMLSPKSSRPSTPTHHAFSPAQPFSTIYSISVTGSTFDDCSSENFSKSSQSNFSQWRLLRMNAPEWKYAMLGCLGAIGSGICQPFYSYCLGIVASVYFITDHSRIISEIRFYSSIFCIIAIVNFISSLVQHYNFAIMGEHLLKRVRENLLEKVMTFEIGWFDQEENTSAAICARLAADANLVRSLVAERMSLLVQVFITATLAFALGLVVAWRVAIVMIAMQPLIIACFYSKSILMKSMSGKARKAQTESSQLAMEATINHRTIAAFSSEKTILNLFRNAMEGPHKESIKQSWISGSILSMSQFLTTASIALTFWYGGWLLNENLVASKHLLQVFLILMGTGRQIADTGSMTSDIAKSGRAFGSVFAILDRNSQIEPEDPRLRKFKKNMKGHIKLKDIFFSYPSRPDQMILKGLSLNIEAGKTIALVGQSGSGKSTIIGLIERFYDPVNGSISIDGYDIREFDLRSLRSHIALVSQEPTLFAGTILDNIVYGKNDASEYEIRKAARLANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSEKLVQEALEKIVVGRTCVVIAHRLSTIQSVDTIAVIKNGKVVEQGSHSELLNIASNGIYYSLIMLQGHYSS* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0528 1247 Pfam ABC transporter 370 519 IPR003439 GO:0005524
Dod04g0528 1247 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Dod04g0528 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod04g0528 1247 Pfam ABC transporter 1021 1170 IPR003439 GO:0005524
Dod04g0528 1247 Gene3D - 994 1246 IPR027417 -
Dod04g0528 1247 Gene3D ABC transporter type 1, transmembrane domain 73 976 IPR036640 GO:0005524|GO:0016021
Dod04g0528 1247 Pfam ABC transporter transmembrane region 26 283 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod04g0528 1247 Pfam ABC transporter transmembrane region 681 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod04g0528 1247 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524
Dod04g0528 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 593 IPR027417 -
Dod04g0528 1247 SUPERFAMILY ABC transporter transmembrane region 13 333 IPR036640 GO:0005524|GO:0016021
Dod04g0528 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 25 325 - -
Dod04g0528 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 26 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod04g0528 1247 Gene3D - 350 619 IPR027417 -
Dod04g0528 1247 CDD ABC_MTABC3_MDL1_MDL2 352 593 - -
Dod04g0528 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1242 IPR027417 -
Dod04g0528 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 17 1244 IPR039421 -
Dod04g0528 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Dod04g0528 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Dod04g0528 1247 PANTHER OS04G0481700 PROTEIN 17 1244 - -
Dod04g0528 1247 SUPERFAMILY ABC transporter transmembrane region 667 981 IPR036640 GO:0005524|GO:0016021
Dod04g0528 1247 CDD ABC_MTABC3_MDL1_MDL2 1003 1242 - -
Dod04g0528 1247 SMART AAA_5 1030 1216 IPR003593 -
Dod04g0528 1247 SMART AAA_5 379 565 IPR003593 -
Dod04g0528 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 985 - -
Dod04g0528 1247 MobiDBLite consensus disorder prediction 611 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0528 Dod-Chr4 7538040 7545063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0528 26 599 Calmodulin-binding Proteins AT2G36910 35.334 3.94e-103 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0528 K05658 - gmx:100804664 1986.85