Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0510 ATGGGTCTCTCAAATTATCCTTGTGCAGCTGAAGGGGTGATACCTTTGATTGTGATGAACACGGTTATGTCAGTGGCTTTGTTGAAGAACATGTTTAGATCGGTGCTCCAAGCGGTTGGTGCCACTACTTCTTCAAGCACTGTAGCAGCAACAACAACAACAACAACTACTACTACTTATTACTATCCGTATAGTAGTGTTCCGGACACAATTGTGGGTTCGAGTCATCGAAGGAATTCAGTGTCGATAACACAGTACAAGTCGTTGTGCCGCGGCAAGGGGAGTGGCAGTGGCAGTGCTATGGCGGTGGAGTGCTGCGTGTGTCTGTGTGGGTTTGAGGCCAATCAAGAGGTGAGCGAGTTGCCTTGCAAGCATTTCTTCCACAGAGGATGCTTAGACAAATGGTTTGACAACAGACACAGCACCTGCCCCTTGTGCCGTTCATATTACTAG 453 0.479 MGLSNYPCAAEGVIPLIVMNTVMSVALLKNMFRSVLQAVGATTSSSTVAATTTTTTTTTYYYPYSSVPDTIVGSSHRRNSVSITQYKSLCRGKGSGSGSAMAVECCVCLCGFEANQEVSELPCKHFFHRGCLDKWFDNRHSTCPLCRSYY* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0510 150 Pfam Ring finger domain 104 147 IPR001841 -
Dod04g0510 150 SUPERFAMILY RING/U-box 104 149 - -
Dod04g0510 150 SMART ringv_2 104 147 IPR011016 GO:0008270
Dod04g0510 150 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Dod04g0510 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 149 IPR013083 -
Dod04g0510 150 SMART ring_2 105 146 IPR001841 -
Dod04g0510 150 PANTHER - 1 149 IPR044249 -
Dod04g0510 150 PANTHER F21J9.24-RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0510 Dod-Chr4 7303648 7305125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0510 1 148 C3H Transcription Factor Family AT2G04240 33.987 5.28e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0510 K16285 - gmx:100811790 171.4