Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0506 ATGATCGATCCTCCCTTTGATATTATCGCATACTCACTCCATTACTTCAATTGGAAAATGGAGTGGGCCCACTTGCTCTTCCTCGTGGTCGTAGAGCTATTGATGATGTCCATGTCAGTGTTCTATTGCGTGGATGCACAAGCGGGCGCAACAGCAAACCCTTCCTTTGGCTATACCATAAGAGAGAACCTCAAGGCAACAATGAGTGTCGTGTTAGTGGCGTTCTTCGCAGCCTTCGTATTCATGGGAATCTTCTCACTCTACCTCTACCATTGCTCCTACAGGTACGGTACCCACCACAGCCCGTTGGGGGCGGCGACGGAGCTGTGCCACCGCGGCGTGAACCGGCAGGAGATCGACAAGTGCCCAATCTTGGTATATTCGGCGGTGAAGGACCTCAAGATCGGAGGAAGCGCACTGGAATGCGCCGTGTGCCTGAGCGAGTTCCAAGACTACGACAACATTCGGCTTCTCCCGAAATGCCACCATGTCTTCCACCCGGACTGCATCGACGAGTGGCTCCTCCCTCACATGACCTGCCCTGTCTGTCGCACCACCGTCTCCTCCGACGTCTCCGACATCAACACTGCCACAACAACAACAACGTCTGCGTCCAACACCACCGAAACTGAGGAACAACAGCATCATGTGGTGTGTGATGACGTGGCGACAGGACAGGGCAGTGAAAGCGACATAAGGGTTGTTATTCCTCCGTGTGAATGGAGGGTGTTGGACAAGTTGCCGAGGTCGCATTCGACGGGTCATTCTCTGGTGGAATTACCCGAGGTGGTGGACAGGTACACTCTGAGGCTGCCTGACCATGTTAGGAGGCAGGTTCTCGCGAGTCACGGCAGGGTTCTGCGCTTGGCGGCGTCTAGCGACGTCGCTTTGCCCGCTGGAGTGTGGAGTTCGAAGAGAGTCTGTTACAGAGGGGAAAGCAACAACGTGGCCGTGTCGATGACTACTCCTCGGTTTGTTTCTGGAGGAATATGGGGCTTGGGTTCTTATGCGAATGATGATAATTGGGCGAGTGAAGCTAGAGGAGGAGGAGGAGGCGTTGAGGTTCATGGGAGGAGGTGCTGGACGCCACTTAGAATGTCGTTTAGCAGGGTGGATGAGGGAGCTCAGAAACCGGCGCATGGACACTTGGTTTGA 1155 0.5455 MIDPPFDIIAYSLHYFNWKMEWAHLLFLVVVELLMMSMSVFYCVDAQAGATANPSFGYTIRENLKATMSVVLVAFFAAFVFMGIFSLYLYHCSYRYGTHHSPLGAATELCHRGVNRQEIDKCPILVYSAVKDLKIGGSALECAVCLSEFQDYDNIRLLPKCHHVFHPDCIDEWLLPHMTCPVCRTTVSSDVSDINTATTTTTSASNTTETEEQQHHVVCDDVATGQGSESDIRVVIPPCEWRVLDKLPRSHSTGHSLVELPEVVDRYTLRLPDHVRRQVLASHGRVLRLAASSDVALPAGVWSSKRVCYRGESNNVAVSMTTPRFVSGGIWGLGSYANDDNWASEARGGGGGVEVHGRRCWTPLRMSFSRVDEGAQKPAHGHLV* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0506 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Dod04g0506 384 SMART ring_2 142 183 IPR001841 -
Dod04g0506 384 SUPERFAMILY RING/U-box 141 193 - -
Dod04g0506 384 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Dod04g0506 384 Pfam Ring finger domain 141 184 IPR001841 -
Dod04g0506 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 29 305 - -
Dod04g0506 384 CDD RING-H2_PA-TM-RING 141 184 - -
Dod04g0506 384 PANTHER RING FINGER DOMAIN-CONTAINING 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0506 Dod-Chr4 7267729 7269784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0506 24 280 Rapid Response to Elicitors AT3G05200 38.462 1.41e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0506 K10664 - fve:101295180 205.297