Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0503 ATGGGTTTCCAATTCCATAGGAAACTGTTTCACCCTTATGATGGTTCAATTGACGCCATAATCATCATGCCATGCAGAACCTATTGCAGCCCAATTCCTTCCCCTCTTCACTCACCAATCTCAGAGCCAAATGCTGCAAACTCCTTGCTTTCTTCCTTCCTTGATGGAAATCACATGGATTCAAGCTATTTTCTTCATGTTGCCATGATTTCCATTGCTAGCACAATTGGCCTACTCATGATTCTCTTCATCTTGTCCAAAATCATAAGGCTCTTTTGTTCAAGGAGACAGTACTTTAGCAGGAGAAACCCACCAATACTTTTTGATATTCGTGGCGGCTCTCGCTTTTCTGATGATGAAGGACCGGCCATTGGCCATGACATATGGATCATCCCCGCCGTAGGTCTCCAGCAATCAACCATAGAATCCATCACTGCCTTCAAATATAGGAGAGATGAGGGGCTGATAGAAGGTACCGAGTGTCTAATTTGTCTCGGTGAGTTTCAAGAAGGTCAAAGTCTAAGACTCTTGCCAAAGTGCACACACTCTTTTCATATCCCTTGCATTGATACTTGGTTGATATCACATAACAGTTGTCCAACGTGTCGTGCCCCTATTGTTTATAATACTGGTAATAGTAGTGGTGGTGGAGTAGAGTTGGTAAGAACCACTGAGCGTGATCCAATTTCAAGCTCTTCTAGTGAAAATGAAGAGACCCAGATGGAGAATTTGGGTGGTGAAGCAGAAAGTCACCATGTTGGAGAAAGTGAGAGCAGTGGAGTGAGGGTTGATGATGATGATTCTTGTGTACTTAGTTGTGAAGATGGAGAGGACAGTGCAACAATCCCGGATAAAAGTTTGATTTGTTCTGAAAAGATGAATTGCCATTCTTCAATTCCAATTGGTTGTGTTTCTAGTGCAAGGGAATTCCAAGAGGAAATTATTCAACCCATGAGGGGGTTAACCTCAGTGGATTCATCATGTGATTCAATGATGTTTCATGATGTGGTGGATTCAAATTCTGATGTTGAGAGCACAGACGCCAACTTTGATGAAAACAGGGTTTCAAGTAGCAAGGATTTCGCTACTGCAAAGCAAGGTAGCGGAAGTTCAACCATTCATAAAGTGGCTTCAATTGGACATGCACTGCAGAAGAGGCATTTCTCATTGAGAAGGTCTTCTTCACATAGAATAAAGTTCATGTTTTCCAGACGATGCAGGAGCCACAGCTCAAATCTTACCCTGTAA 1248 0.4255 MGFQFHRKLFHPYDGSIDAIIIMPCRTYCSPIPSPLHSPISEPNAANSLLSSFLDGNHMDSSYFLHVAMISIASTIGLLMILFILSKIIRLFCSRRQYFSRRNPPILFDIRGGSRFSDDEGPAIGHDIWIIPAVGLQQSTIESITAFKYRRDEGLIEGTECLICLGEFQEGQSLRLLPKCTHSFHIPCIDTWLISHNSCPTCRAPIVYNTGNSSGGGVELVRTTERDPISSSSSENEETQMENLGGEAESHHVGESESSGVRVDDDDSCVLSCEDGEDSATIPDKSLICSEKMNCHSSIPIGCVSSAREFQEEIIQPMRGLTSVDSSCDSMMFHDVVDSNSDVESTDANFDENRVSSSKDFATAKQGSGSSTIHKVASIGHALQKRHFSLRRSSSHRIKFMFSRRCRSHSSNLTL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0503 415 CDD mRING-H2-C3H2C2D_ZSWM2 160 203 - -
Dod04g0503 415 Pfam Ring finger domain 160 203 IPR001841 -
Dod04g0503 415 MobiDBLite consensus disorder prediction 225 263 - -
Dod04g0503 415 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 25 407 IPR044675 -
Dod04g0503 415 PANTHER RING-H2 FINGER PROTEIN ATL54 25 407 - -
Dod04g0503 415 MobiDBLite consensus disorder prediction 244 263 - -
Dod04g0503 415 MobiDBLite consensus disorder prediction 225 243 - -
Dod04g0503 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Dod04g0503 415 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Dod04g0503 415 SUPERFAMILY RING/U-box 151 212 - -
Dod04g0503 415 SMART ring_2 161 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0503 Dod-Chr4 7233857 7235305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0503 126 210 C3H Transcription Factor Family AT5G10380 58.824 5.01e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0503 - - aprc:113851306 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2363 04 47428665 47430840 Dod04g0503 04 7233857 7235305 PCT