Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0501 ATGAAGAAAACCGCCTTCCGCCCAAACCCCAACTACCACCAAAACACCGCCGTTCGCCACCCCGATCTCCACCGTCGACCACCGTCCCGGCCCATGCACCGCCCCCACTGGAAGCCCGGAGTCTACTCCAACCACCGCCACAACGACCGCCCCCCTGAACCCAACAACAAACCCCCGTCGCCGCCCCTCCCCAATTTCGTCGTCCACCTCCTCCCCGGCCGCCGCCCCCTCCGCCGCGACCACCTCCAGTCCCTCATCTGCAAATGCCCCTCCACCCCCGAATCCTCCTCCCTCTTCCCCCCCTCCGACCACCACAACTACCGCACCACCACAACCAAAACCACCGCCGCTGCCGTCCTCAACTTCCGCCAGTGGGTTGACGCCCTCAACGCCGTCGCCTACCTCTGGGAGACTCGCCTCGACGGCGGCCACGACCTCACTCCGGAGCTCACGTCTAACGTCATGGTCCCCTCCGACATGGACGAGATTCAGGGACGCATCCGCGCAATCTTCGCGAGGCACGTTAGGGTTTTGATTGAAGGGAAAGAGGTGAAACGCTGGCGCGACGAAATCGATCGGTTATCGAAGGAGATCGCGAGCGTGAAGGCAGTTCTGGGGACGCAGCTCCGGGTTGGGGTTTATTACCAGCAATTGGATAAGAAGAAGGTTCTAGAAGACGAGAAGAGGCTCGTGGAGAGGAGGGTGAGGGAGTTTCGTTGCGCCATGGAGTGCTTCCTGAAGGTTCTAGAAGATAATAATGAGAAGAAGAAGGGGAATGATTATTATTATTATGATGATGATGATGATGGTTTTGATGGTGTTGATGTGTTTAGGTTTGATGGGAGGTTGTTGTTTGATTGGAAGAGGATTCACTGCTTGATCATGAGGGAGCGTCGTAGGCTTGAGGAGGCTTTGCCGGTTTATGCTTTCCGGAGGGATATTCTCAGGGAAATTCTTCATCAGCAGATAGTGGTATTGATTGGAGAGACTGGTTCTGGAAAGAGTACACAGCTGGTACAGTTTCTTGCTGATTCTGGGATTGGAGCTAATGAGTCCATCATCTGCACACAACCCCGCAAGATTGCTGCCAAGTCATTGGCTCAAAGAGTACAGGAAGAAAGCAGTGGCTGTTATGAAGGCAATGCAGTCAATAGTTGTGCTACATTTTCATCCTTGCATGAGCTTGATTCCAGAATAACATTCATGACAGACAACTGTTTACTGCAGCACTACATGAATGATAAGAACTTGACTGGGGTCTCATGCATCATAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTGTTGTTGGCATTGATCAAGAATTTACTCTGTAGGAGGGTTGAAATGCGGCTTGTTATTATGTCTGCCACAGCTGATGCAAAGCAGCTGTCTGATTACTTCTATGGTTGTGGAATTTTTCATGTGCTTGGAAGAAGCTTTCCTGTGGATGTGACATATGTTCCGTCTGACTACACAGGCTATTCTGGTTCTGTTATTCCCTCGTATGTTTCTGATGTTGTCAGAATGGCGACTGAGATTCACAAAACCGAGAAAGAGGGAACTATTCTTGCATTTTTGACCTCACAGATTGAAGTAGAATGGGCCTGTGAAAATTTTAAAGCTCTCTCTGCTGTTGCTTTGCCCTTACATGGAAAGCTTTCGCATGAAGAGCAATTTCATGTTTTCCAGAACTACCCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCTGAGACATCACTTACAATTCCTGGGGTTAAGTATGTGATAGATTCTGGGTTTGTTAAAGATAGTAGATTTGATCCTGGCAGTGGGATGAATGTACTAAAGGTTTCCTGGATCAGCCAGAGCTCTGCTAATCAACGGGCCGGCCGTGCTGGGAGGACTGAACCTGGTCAGTGCTATAGATTGTACTCAGAAGCTGATTATCAGTCCATGGAGCAAAATCAAGATCCTGAGATTCGAAGAGTTCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTGGGGGTGAAGAATGTGCAGGAATTTGATTTTGTTGATGCTCCAAGTCCTAGCTCTATTGAGATGGCGATCCAGAATCTAATTCAGTTAGGAGTCGTTAAACTGAACAATAATGTCCTGGAATTGACTCATGACGGCAGGTGCTTAGTAAGAATGGGAATCGAACCCAGGCTTGGTAAACTGATTCTTGGCTGTTGTCATTATGCTCTGGGTAGAGAAGGCATTATCCTCTCTGCTGTGATGGCCAATGCCAGTAGCATATTTTGCAGAGTTGGTAATGAATGTGAAAAACAAAGATCTGATTGTCTCAAAGTGCAGTTTTGCCATCGTGATGGCGATCTTTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAGAGGAAGAACCAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAGACACGATTTTGGAACTAGAATCTTGCCTTGAGCGTGAACTTAGAATTGTTGTTCCAAGTTACTGGCGTTGGAACCCCCATTTGCCCTCTGAATATGATAAGTATCTGAAAAGGGTTATACTGTCCTCGCTTCCTGAGAATGTAGCCATGTACTCTGGATGCAAACAACTTGGTTATGAAGTGGCACTGACTGGGAAACATGTTCAACTTCATCCATCTTGTTCACTGCTTGTATTTGCTGAGAGACCTAGTTGGGTGGTTTTTAGTGAGCTTCTTTCTGTTTCTAATCAATATTTGGTCTGCGTAAATGCATTTGACTTTGACTCGTTGTACGACCTTTACCCTCCTCCCTTGTTTGATGTTGACATGATGGAAAAGCGGAAATTGCAAACGAAGATGTTGACTGGTTTTGGCAGTACTCTTCTCAAGAGATTTTGTGGGAAAGCTAACAGTAATTTGCTTGGTCTTGTCTCACGTATACGAAAAGCTTGTATGGATGAACGTATCTTCATTGAAGTCAATATTGACCAAAATGACATTCAGTTACATGCCACTTCACATGATATGGAAACAGCTCTCCAGTTCATTAATGATGTTTTAGAACATGAGAAAAAGTGGTTACGTACTGAATGTATGGAAAAATGTTTGTATCATGGATCTGGTCTCTCACCTTCTGTAGCTTTGTTTGGCTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCGTTTTTTGACTGTTGATGTTTGTCACCCAGACATGAATGCAATTGATGACAAGGAGCTCTTGGTGTTTTTTGGGAAGAAGACCTCAGGTAGTATCTGTGCTGTGCACAAGTTCACAAGCATGGGAAATGATGTTGAAGATAGGGAAAAGTGGGGCAGGATAACATTTCTCTCTCCTGATGCTGCTGTAAGAGCTGTTGAATTAGATGGAGAGGAGTTTTGTGGCTCCTCATTGAAAGTTTCCCCTTCACAAACAGCTGCTGGAGGGGATAAATCATTATTGTTTCCTGCTGTGAAAGCAAAAATTTATTGGCCACGTAGGCTTAGCAAGGGGTTTGGCATAATTAAATGTGACATAAAGGATGTCACTATCATCTTGAGAGATTTCTATAACCTTGCAATCGGAGGAAGGTATGTTAGATGTGAACCTGGCAGAAAAGATGCAGATAGTGTTGTGATATGTGGGATTGACAAGGAGCTCTCAGAAGCTGAAATTTTAGACGCACTAAGAAGTGCTACGAGTAGAAGGATTTTGGACTTTTTCTTGATTAGAGGAGATGCTGTTGGAAATCCACCACCCAGTGCCTGTGAAGAGGCACTCCTAAAAGAAATTTCCCCCTTTATGCCCAAAAGAAACCCCCATGTTAGTTCTTGTCATGTTCATGTGTTCCAACCTGAGCCCAAGGATGTTTCCATGAGAGCTATAATCACTTTTGATGGAAGACTACATTTAGAGGCTGCCAAAGCTTTGGACCAAATTGAAGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTGCCAGCATGTCTTCCATAGCTCCTTGACATTTCCAATGCCAGTGTATCGTGTAATTAAGGAAGAATTGGAGAAAGTGCTGGAAAGATTCAGCAAATTGAAGGGTCTTGAATGGAACCTAGAGAGGACTGCTAACGGTGCCCACCGAGTGAAAATAACAGCTAATGCTACAAAGACAGTAGCAGAAGTTAGGAGACCTCTGGAAGAATTATCAAGAGGGAAAACCATTGAACATGACAACCTCACCCCTGCAGTTCTACAACTAATGCTGTCAAGAGAGGGCTTTAGTCTTAGAAGCTCATTGCAGCAAGAGACAGGAACTTACATTCTTTTTGACAGACACAACCTGAATTTACGGGTGTTTGGTTCTCCAGACAAGATTGTTTTGGCTCAGCAGAAGGTGATTCAATCCCTACTCTCTCTCCATGAGGAAAAGCAGTTAGAAATCCACTTGAGGGGGCGAGATCTGCCTCCTGACCTAATGAAGCAAGTGGTTAGGAATTTTGGGCCGGATCTCCGTGGACTAAAAGAGAAGGTACCTGGGGCAGAGCTTATACTCAACATACGGCGCCAGATGATCTTGCTTCGTGGTGAAAAGGAGTTGAAACCAAAAGTAGAGGAATCCATTTATGAGATTGCGCGTTCAACTCGTCATACTGTCAAGAGACCTGATGACGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATACCAGCTTGAAAGCTGTTGTCATTTGTTCTGCCGGATGTGTCTGGTGGAGCAATGTGAATCTGCTATAAGAAACCAAGGGACTTTCCCAATATGTTGTGCTCACGAGGGCTGTGGAGATCCCATTCTGCTTACAGATTTGAGATCTCTCCTGTTAAATGATAAGTTGGAGGAACTTTTCAGGGCCTCTATGGGAGCTTTTGTGGCATCCAGTGGGGGCACTTACAGGTTTTGCCCGTCCCCCGACTGCCCCTCAGTTTATCGAGTTGCGGATCCTGGGACAGCCGGTGAGCCATTCGTATGTGGTGCATGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCATACCTCTCATGTGAGAGATACCGAGAATTCAAGGAGGATCCGGACTCATCTCTGAAGGAGTGGTGCAAGGGGAAAGAACATGTTAAGTGCTGCCCTGGTTGTGGATACACAATTGAGAAGGTAGATGGGTGCAACCATATTGAGTGCAAGTGTGGAAAGCATGTTTGCTGGGTTTGCTTGGAGTTCTTCCGAACTAGTGATGATTGCTATAACCATTTGAGAGACATACACATGGCCATCATCTAA 5313 0.4577 MKKTAFRPNPNYHQNTAVRHPDLHRRPPSRPMHRPHWKPGVYSNHRHNDRPPEPNNKPPSPPLPNFVVHLLPGRRPLRRDHLQSLICKCPSTPESSSLFPPSDHHNYRTTTTKTTAAAVLNFRQWVDALNAVAYLWETRLDGGHDLTPELTSNVMVPSDMDEIQGRIRAIFARHVRVLIEGKEVKRWRDEIDRLSKEIASVKAVLGTQLRVGVYYQQLDKKKVLEDEKRLVERRVREFRCAMECFLKVLEDNNEKKKGNDYYYYDDDDDGFDGVDVFRFDGRLLFDWKRIHCLIMRERRRLEEALPVYAFRRDILREILHQQIVVLIGETGSGKSTQLVQFLADSGIGANESIICTQPRKIAAKSLAQRVQEESSGCYEGNAVNSCATFSSLHELDSRITFMTDNCLLQHYMNDKNLTGVSCIIIDEAHERSLNTDLLLALIKNLLCRRVEMRLVIMSATADAKQLSDYFYGCGIFHVLGRSFPVDVTYVPSDYTGYSGSVIPSYVSDVVRMATEIHKTEKEGTILAFLTSQIEVEWACENFKALSAVALPLHGKLSHEEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDSRFDPGSGMNVLKVSWISQSSANQRAGRAGRTEPGQCYRLYSEADYQSMEQNQDPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSPSSIEMAIQNLIQLGVVKLNNNVLELTHDGRCLVRMGIEPRLGKLILGCCHYALGREGIILSAVMANASSIFCRVGNECEKQRSDCLKVQFCHRDGDLFTLLSVYKEWEALPRERKNQWCWENSINAKSMRRCQDTILELESCLERELRIVVPSYWRWNPHLPSEYDKYLKRVILSSLPENVAMYSGCKQLGYEVALTGKHVQLHPSCSLLVFAERPSWVVFSELLSVSNQYLVCVNAFDFDSLYDLYPPPLFDVDMMEKRKLQTKMLTGFGSTLLKRFCGKANSNLLGLVSRIRKACMDERIFIEVNIDQNDIQLHATSHDMETALQFINDVLEHEKKWLRTECMEKCLYHGSGLSPSVALFGSGAEIKHLELEKRFLTVDVCHPDMNAIDDKELLVFFGKKTSGSICAVHKFTSMGNDVEDREKWGRITFLSPDAAVRAVELDGEEFCGSSLKVSPSQTAAGGDKSLLFPAVKAKIYWPRRLSKGFGIIKCDIKDVTIILRDFYNLAIGGRYVRCEPGRKDADSVVICGIDKELSEAEILDALRSATSRRILDFFLIRGDAVGNPPPSACEEALLKEISPFMPKRNPHVSSCHVHVFQPEPKDVSMRAIITFDGRLHLEAAKALDQIEGKVLPGCLSWQKIKCQHVFHSSLTFPMPVYRVIKEELEKVLERFSKLKGLEWNLERTANGAHRVKITANATKTVAEVRRPLEELSRGKTIEHDNLTPAVLQLMLSREGFSLRSSLQQETGTYILFDRHNLNLRVFGSPDKIVLAQQKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQVVRNFGPDLRGLKEKVPGAELILNIRRQMILLRGEKELKPKVEESIYEIARSTRHTVKRPDDGPSCPICLCEVEDGYQLESCCHLFCRMCLVEQCESAIRNQGTFPICCAHEGCGDPILLTDLRSLLLNDKLEELFRASMGAFVASSGGTYRFCPSPDCPSVYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYLSCERYREFKEDPDSSLKEWCKGKEHVKCCPGCGYTIEKVDGCNHIECKCGKHVCWVCLEFFRTSDDCYNHLRDIHMAII* 1771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0501 1770 Pfam Helicase conserved C-terminal domain 516 633 IPR001650 -
Dod04g0501 1770 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 858 933 IPR011709 -
Dod04g0501 1770 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1592 1686 - -
Dod04g0501 1770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 674 IPR001650 -
Dod04g0501 1770 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 116 1516 - -
Dod04g0501 1770 CDD SF2_C_RHA 483 642 - -
Dod04g0501 1770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1558 1637 IPR013083 -
Dod04g0501 1770 SMART ha2_5 694 790 IPR007502 GO:0004386
Dod04g0501 1770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 812 IPR027417 -
Dod04g0501 1770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 479 IPR014001 -
Dod04g0501 1770 Pfam DEAD/DEAH box helicase 313 466 IPR011545 GO:0003676|GO:0005524
Dod04g0501 1770 Pfam Helicase associated domain (HA2) 695 789 IPR007502 GO:0004386
Dod04g0501 1770 SUPERFAMILY RING/U-box 1714 1762 - -
Dod04g0501 1770 CDD DEXHc_RHA-like 322 478 - -
Dod04g0501 1770 ProSitePatterns Zinc finger C2H2 type domain signature. 1745 1766 IPR013087 -
Dod04g0501 1770 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 421 430 IPR002464 -
Dod04g0501 1770 SMART ultradead3 303 488 IPR014001 -
Dod04g0501 1770 ProSiteProfiles TRIAD supradomain profile. 1557 1765 IPR044066 -
Dod04g0501 1770 SUPERFAMILY RING/U-box 1559 1625 - -
Dod04g0501 1770 MobiDBLite consensus disorder prediction 1 65 - -
Dod04g0501 1770 ProSitePatterns Zinc finger RING-type signature. 1577 1586 IPR017907 -
Dod04g0501 1770 Gene3D - 482 654 IPR027417 -
Dod04g0501 1770 PANTHER ATP-DEPENDENT RNA HELICASE 1592 1686 - -
Dod04g0501 1770 PANTHER ATP-DEPENDENT RNA HELICASE 116 1516 - -
Dod04g0501 1770 SMART ibrneu5 1625 1693 IPR002867 -
Dod04g0501 1770 SMART ibrneu5 1694 1758 IPR002867 -
Dod04g0501 1770 Gene3D - 293 481 IPR027417 -
Dod04g0501 1770 Gene3D - 1671 1767 - -
Dod04g0501 1770 Coils Coil 184 204 - -
Dod04g0501 1770 SUPERFAMILY RING/U-box 1644 1698 - -
Dod04g0501 1770 Gene3D - 656 699 IPR042035 -
Dod04g0501 1770 Pfam IBR domain, a half RING-finger domain 1638 1693 IPR002867 -
Dod04g0501 1770 SMART helicmild6 536 634 IPR001650 -
Dod04g0501 1770 ProSiteProfiles Zinc finger RING-type profile. 1561 1603 IPR001841 -
Dod04g0501 1770 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0501 Dod-Chr4 7216034 7223904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0501 1576 1753 C3H Transcription Factor Family AT2G31770 28.877 4.31e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0501 K12818 - gmx:100810008 2633.21