Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0500 ATGAAGAGGCCTGGCAGCTCAGATTCCTTAGGCACTCTCATGACAATTTGTCCATCAACAGAGGAACACAGTCCGAGGAACAACCACGTGTACGGTAGGGATCCGTTCCAGTCGATGCTGGAGGGACTGGACGAGGAAGGGTGTGTGGAGGAACCAGGGCACCACTGCGAGAAGAAGCGTCGACTTAGTGTGGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAGGTGGAGAACAAGCTTGAGCCCGAGAGGAAGGTGAGGCTCGCCCAGGAACTCGGGTTGCAGCCCAGACAGGTTGCCGTTTGGTTCCAAAACCGTCGAGCCAGGTGGAAAACAAAGCAGCTCGAGAGAGATTTTGGCGTCCTCAAAGCCAATTATGAAGCTCTTAAGCTTAACCATGACGCCCTCAAACAGGACAACGAAGCGTTGCACAAGGAGATTAAGGAATTGAGGTCAAGGCTGCAAGAAGATCAGAACACTGCAAGCGGCGTAGTTTCTGTGAAGGAAGAGATAATAACGATGCCTGAATCCGAAGTTGGCAGAGCGAACCAACCCGGTGACCCATCTCCTGAAGCCTCCATTCCCGGATCAGAGTCCAACGATCACTTGAACTACGATTGCTTCAACGACAAAGATGGTGTTGGATCACTCTTCCCTTCAGACTTCAAAGACGGTGCTTCTGATAGCGACTCAAGTGCAATCTTGAACGAAGATAACAGCCCCAAAGCCGCAGTTTCCTCATCTGGGGTGCTTCAAAATCAGCAACTCTTGATGTCTCCATCAGCTATGAACTGCTTCCACCAGTTCCAGAAATCATACCATCAGCAGGCGCAGTATGTGAAGATGGAAGAGCACAATTTCTTCAGCGCAGATGAGGCCTGCAATTTCTTCTCTGATGAGCAAGCTCCGACCCTTCATTGGTACTGTTCAGATCAGTGGGGTTAA 945 0.5058 MKRPGSSDSLGTLMTICPSTEEHSPRNNHVYGRDPFQSMLEGLDEEGCVEEPGHHCEKKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKANYEALKLNHDALKQDNEALHKEIKELRSRLQEDQNTASGVVSVKEEIITMPESEVGRANQPGDPSPEASIPGSESNDHLNYDCFNDKDGVGSLFPSDFKDGASDSDSSAILNEDNSPKAAVSSSGVLQNQQLLMSPSAMNCFHQFQKSYHQQAQYVKMEEHNFFSADEACNFFSDEQAPTLHWYCSDQWG* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0500 314 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Dod04g0500 314 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Dod04g0500 314 MobiDBLite consensus disorder prediction 175 205 - -
Dod04g0500 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 306 IPR045224 GO:0003700
Dod04g0500 314 MobiDBLite consensus disorder prediction 1 25 - -
Dod04g0500 314 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Dod04g0500 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 306 - -
Dod04g0500 314 SMART HOX_1 56 117 IPR001356 GO:0003677
Dod04g0500 314 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Dod04g0500 314 Gene3D - 53 120 - -
Dod04g0500 314 Coils Coil 126 160 - -
Dod04g0500 314 SUPERFAMILY Homeodomain-like 41 115 IPR009057 -
Dod04g0500 314 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Dod04g0500 314 Pfam Homeobox associated leucine zipper 113 155 IPR003106 GO:0006355|GO:0043565
Dod04g0500 314 CDD homeodomain 58 114 IPR001356 GO:0003677
Dod04g0500 314 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0500 Dod-Chr4 7145527 7148788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0500 1 313 Homeobox Transcription Factor Family AT2G22430 46.647 6.44e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod04g0500 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0500 K09338 - qsu:112039557 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2366 04 47463040 47465761 Dod04g0500 04 7145527 7148788 PCT