Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod04g0479 | ATGTCATTAGCCATGGAATTCGTAGTTGTGCTTTTGCTATTGGCTAGCACATGCTCTTTTGCACTGCCCGATGCTGATTCACAAGAAGAAGCACTATATGCATTGAAGATATCATTGAATGCTTCAAAATACCAGCTTACTAACTGGAATAAAGACCAAGTAAGCCCTTGCACTTGGTCCAATGTTTACTGTGACCAGAATAGCAAAGTTGTTGAAGTTTCACTAGCATTTATGGGATTTACAGGGTACCTGACACCAAAAATAGGAGCTCTAAAAAGTCTTAACATTCTTTCTTTGCCAGGGAATGGCATCACTGGTGGCATACCAAAAGAATTAGGAAACCTTACAAGCTTGGTCAGATTGGATTTGGAAAACAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAGAAAGCTTCAATTCTTAATATTGAGTCAAAACAACCTCAATGGGTCAATTCCTGAATCACTTGGCAGTCTTCTGAGCTTGAACAATGTTCTTCTAGATTCAAATGATCTTAGTGGTCAGATACCAGAGCAGTTATTCGAAGTTTCTAAATACAATTTCACTGGAAATAAGTTGAATTGTGGCATAAATCATCCCCGTCTTTGTGCATCTGATAATGCAGATCAAGGTTCATCATGTATAACAAAAACTGGCCTAATTGTTGGAATAGTTGTAGGTTTAGTGCTTATTATTTTACTTGGTGGTGTACTATACTTCTGGTGCAAGGGCCACAAGCATGAAGTTTTTGTGGATGTTGCAGGGGAAGTTGATGGGCGAATTGCGTTTGGTCAACTGAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATATCTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAACTGATGGCACAAAAGTTGCTGTTAAAAGGTTAACTGATTTTGAAAGTCCTGGGGGAGATGCTGCTTTCCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTCCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACCTGGGGAACCTGTTTTGGGTTGGCCTACAAGAAAACAAGTGGCTCTGGGAACAGCCCGAGGCCTAGAATATCTTCACCAGCAATGCAATCCTAAGATTATTCATCGGGACGTGAAGGCAGCTAATGTATTATTAGATGGAGATTTTGAGGCAGTTGTGGGTGACTTTGGTTTGGCAAAGTTAGTCGATGTTCGAAAAACTAATGTAACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAAGACAGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTATTACTGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAGACTAGATACAATTGTCGACTGCAACCTGAATAAAAATTACAACATAGAAGAGGTTGAAAAGATTGTACAAGTTGCATTACTCTGCACACAACCATCACCAGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAGGACTACGAGAGACTACAAAGAAGATTAGAATGGGGAGGAGATTCAGTTTATAACCAAGATGCAGTTGAGTTGTCAGGAGGAAGATGA | 1827 | 0.4083 | MSLAMEFVVVLLLLASTCSFALPDADSQEEALYALKISLNASKYQLTNWNKDQVSPCTWSNVYCDQNSKVVEVSLAFMGFTGYLTPKIGALKSLNILSLPGNGITGGIPKELGNLTSLVRLDLENNRLTGEIPSSLGNLRKLQFLILSQNNLNGSIPESLGSLLSLNNVLLDSNDLSGQIPEQLFEVSKYNFTGNKLNCGINHPRLCASDNADQGSSCITKTGLIVGIVVGLVLIILLGGVLYFWCKGHKHEVFVDVAGEVDGRIAFGQLKRFAWRELQIATDNFSEKNILGQGGFGKVYKGVLTDGTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLGWPTRKQVALGTARGLEYLHQQCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDTIVDCNLNKNYNIEEVEKIVQVALLCTQPSPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNRRQDYERLQRRLEWGGDSVYNQDAVELSGGR* | 609 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod04g0479 | 608 | Pfam | Leucine rich repeat N-terminal domain | 25 | 65 | IPR013210 | - | |
Dod04g0479 | 608 | ProSiteProfiles | Protein kinase domain profile. | 285 | 564 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Dod04g0479 | 608 | ProSitePatterns | Protein kinases ATP-binding region signature. | 291 | 313 | IPR017441 | GO:0005524 | |
Dod04g0479 | 608 | CDD | TM_EGFR-like | 221 | 251 | - | - | |
Dod04g0479 | 608 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 8 | 608 | - | - | |
Dod04g0479 | 608 | SUPERFAMILY | Protein kinase-like (PK-like) | 267 | 560 | IPR011009 | - | |
Dod04g0479 | 608 | Gene3D | Ribonuclease Inhibitor | 25 | 208 | IPR032675 | - | |
Dod04g0479 | 608 | SMART | serkin_6 | 285 | 559 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Dod04g0479 | 608 | SUPERFAMILY | L domain-like | 28 | 198 | - | - | |
Dod04g0479 | 608 | Gene3D | Phosphorylase Kinase; domain 1 | 254 | 361 | - | - | |
Dod04g0479 | 608 | Gene3D | Transferase(Phosphotransferase) domain 1 | 362 | 579 | - | - | |
Dod04g0479 | 608 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 408 | 420 | IPR008271 | GO:0004672|GO:0006468 | |
Dod04g0479 | 608 | Pfam | Protein kinase domain | 286 | 557 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Dod04g0479 | 608 | PANTHER | LRR RECEPTOR-LIKE KINASE | 8 | 608 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod04g0479 | Dod-Chr4 | 6801589 | 6810400 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod04g0479 | 3 | 608 | Receptor kinase-like Gene Family | AT5G10290 | 72.787 | 0.0 | 869 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-II | Dod04g0479 | Pkinase | 2e-42 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod04g0479 | - | - | gmx:100793416 | 973 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod04g0479 | 04 | 6801589 | 6810400 | Dod04g1984 | 04 | 43257029 | 43263625 | PCT |