Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0479 ATGTCATTAGCCATGGAATTCGTAGTTGTGCTTTTGCTATTGGCTAGCACATGCTCTTTTGCACTGCCCGATGCTGATTCACAAGAAGAAGCACTATATGCATTGAAGATATCATTGAATGCTTCAAAATACCAGCTTACTAACTGGAATAAAGACCAAGTAAGCCCTTGCACTTGGTCCAATGTTTACTGTGACCAGAATAGCAAAGTTGTTGAAGTTTCACTAGCATTTATGGGATTTACAGGGTACCTGACACCAAAAATAGGAGCTCTAAAAAGTCTTAACATTCTTTCTTTGCCAGGGAATGGCATCACTGGTGGCATACCAAAAGAATTAGGAAACCTTACAAGCTTGGTCAGATTGGATTTGGAAAACAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAGAAAGCTTCAATTCTTAATATTGAGTCAAAACAACCTCAATGGGTCAATTCCTGAATCACTTGGCAGTCTTCTGAGCTTGAACAATGTTCTTCTAGATTCAAATGATCTTAGTGGTCAGATACCAGAGCAGTTATTCGAAGTTTCTAAATACAATTTCACTGGAAATAAGTTGAATTGTGGCATAAATCATCCCCGTCTTTGTGCATCTGATAATGCAGATCAAGGTTCATCATGTATAACAAAAACTGGCCTAATTGTTGGAATAGTTGTAGGTTTAGTGCTTATTATTTTACTTGGTGGTGTACTATACTTCTGGTGCAAGGGCCACAAGCATGAAGTTTTTGTGGATGTTGCAGGGGAAGTTGATGGGCGAATTGCGTTTGGTCAACTGAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATATCTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAACTGATGGCACAAAAGTTGCTGTTAAAAGGTTAACTGATTTTGAAAGTCCTGGGGGAGATGCTGCTTTCCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTCCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACCTGGGGAACCTGTTTTGGGTTGGCCTACAAGAAAACAAGTGGCTCTGGGAACAGCCCGAGGCCTAGAATATCTTCACCAGCAATGCAATCCTAAGATTATTCATCGGGACGTGAAGGCAGCTAATGTATTATTAGATGGAGATTTTGAGGCAGTTGTGGGTGACTTTGGTTTGGCAAAGTTAGTCGATGTTCGAAAAACTAATGTAACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAAGACAGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTATTACTGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAGACTAGATACAATTGTCGACTGCAACCTGAATAAAAATTACAACATAGAAGAGGTTGAAAAGATTGTACAAGTTGCATTACTCTGCACACAACCATCACCAGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAGGACTACGAGAGACTACAAAGAAGATTAGAATGGGGAGGAGATTCAGTTTATAACCAAGATGCAGTTGAGTTGTCAGGAGGAAGATGA 1827 0.4083 MSLAMEFVVVLLLLASTCSFALPDADSQEEALYALKISLNASKYQLTNWNKDQVSPCTWSNVYCDQNSKVVEVSLAFMGFTGYLTPKIGALKSLNILSLPGNGITGGIPKELGNLTSLVRLDLENNRLTGEIPSSLGNLRKLQFLILSQNNLNGSIPESLGSLLSLNNVLLDSNDLSGQIPEQLFEVSKYNFTGNKLNCGINHPRLCASDNADQGSSCITKTGLIVGIVVGLVLIILLGGVLYFWCKGHKHEVFVDVAGEVDGRIAFGQLKRFAWRELQIATDNFSEKNILGQGGFGKVYKGVLTDGTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLGWPTRKQVALGTARGLEYLHQQCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDTIVDCNLNKNYNIEEVEKIVQVALLCTQPSPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVNRRQDYERLQRRLEWGGDSVYNQDAVELSGGR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0479 608 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Dod04g0479 608 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0479 608 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Dod04g0479 608 CDD TM_EGFR-like 221 251 - -
Dod04g0479 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 608 - -
Dod04g0479 608 SUPERFAMILY Protein kinase-like (PK-like) 267 560 IPR011009 -
Dod04g0479 608 Gene3D Ribonuclease Inhibitor 25 208 IPR032675 -
Dod04g0479 608 SMART serkin_6 285 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0479 608 SUPERFAMILY L domain-like 28 198 - -
Dod04g0479 608 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Dod04g0479 608 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Dod04g0479 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Dod04g0479 608 Pfam Protein kinase domain 286 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0479 608 PANTHER LRR RECEPTOR-LIKE KINASE 8 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0479 Dod-Chr4 6801589 6810400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0479 3 608 Receptor kinase-like Gene Family AT5G10290 72.787 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dod04g0479 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0479 - - gmx:100793416 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0479 04 6801589 6810400 Dod04g1984 04 43257029 43263625 PCT