Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0477 ATGTCTAATCCCACAACACTCGCCGCACAGGATCCCAACACCTCCGCGGATCCCCAACTCCCGCTCCGAAACCTAACCCAGATCCGAACCCGAATTGATTCCCTCCGATGCTTCCTATCGGATTCCATAAACTCCAATGCTCCCCTTACCGACCACCATGCCGCCGCCGTCTCCGATCAAATCGCCGCCGCCCTCCACCTCACCATCGCCAACGCCGGCGCCCTCCTCTCCTTCTCCCGCGCCTTCGATCCCCCGGACTCCGCCGCGCCGCCGCCCAAGATCCCCCCTAGGGTTGACCTCTCATCCTCCTCCTTCGCCGCCGCTGAAAACGCCAGACGCGCTCCCGATCTGAAAATCGAGGCGCCGGACGACGACGCCGCAGATGATTGCGCCGCCGCCGCCGCCGAATATGGTGCTAACGTCGTTGACGACGAGATCGTGGAGCTCGACGCTGTTGAGCTCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGCCGCGACGCGAACCTCCGGATGCACATGCGCGCGCACGGGAACCAGTTCAAGACGCCGGAGGCACTCGCGAAGCCAGAGTCGGCCTCCGCCGCCGCCGTGCGCCGCCGATTCTCGTGCCCGTTCGAGGGATGCAACAGGAACAGGCACCACCGGAGGTTCAGGCCTCTGAAATCGATCGTGTGCGTGAAGAACCACTTCAAGAGGAGCCACTGCCCGAAGATGTACTCTTGCAATCGGTGCCACAAGAAGAACTTTTCGGTTCTCTCGGATCTGAAGAGCCACATGAAGCACTGCGGGGAATCGAAGTGGAGGTGCTCTTGCGGGACCACGTTCTCCAGGAAGGACAAGCTTTTCGGGCACATTGCCCTCTTCGAAGGGCACATGCCCGCGCTGCCCGCCGACGAAGAGGAGAAGGGGAAGCAGGTTGTGGCGGAGGAGGAGGAAGATGAGGATGCTGCAGTTGTGGCGGAGAGTGAGTTGGGTGGTTTTTTTCTGGATGATACTGAGTTGCCTGATGGGTTCTTTGATGATTTGGATGATTTGAGCTCTTTGGGGTTCCCTTTAATTTAA 1080 0.6019 MSNPTTLAAQDPNTSADPQLPLRNLTQIRTRIDSLRCFLSDSINSNAPLTDHHAAAVSDQIAAALHLTIANAGALLSFSRAFDPPDSAAPPPKIPPRVDLSSSSFAAAENARRAPDLKIEAPDDDAADDCAAAAAEYGANVVDDEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPESASAAAVRRRFSCPFEGCNRNRHHRRFRPLKSIVCVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHMKHCGESKWRCSCGTTFSRKDKLFGHIALFEGHMPALPADEEEKGKQVVAEEEEDEDAAVVAESELGGFFLDDTELPDGFFDDLDDLSSLGFPLI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0477 359 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 350 IPR044300 GO:0010044|GO:0010447
Dod04g0477 359 Gene3D Classic Zinc Finger 231 301 - -
Dod04g0477 359 SMART c2h2final6 245 267 IPR013087 -
Dod04g0477 359 SMART c2h2final6 160 182 IPR013087 -
Dod04g0477 359 SMART c2h2final6 207 240 IPR013087 -
Dod04g0477 359 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 8 350 - -
Dod04g0477 359 SUPERFAMILY beta-beta-alpha zinc fingers 157 183 IPR036236 -
Dod04g0477 359 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Dod04g0477 359 Gene3D Classic Zinc Finger 160 183 - -
Dod04g0477 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0477 Dod-Chr4 6788466 6790970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0477 145 305 C2H2 Transcription Factor Family AT1G34370 63.636 3.14e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g0477 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0477 - - gmx:100796506 377.481