Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0472 ATGTGCGGAATACTTGCAGTGTTGGGTTGCGTTGACAACTCTCAGGCCAAGCGCTCTCGTATCATCGAGTTATCTCGCAGGTTGAGGCATAGAGGTCCTGATTGGAGTGGGTTGCATTGCCATGGAGATTGTTATCTTGCTCATCAACGCCTTGCAATCATTGACCCCACTTCAGGGGATCAACCTCTCTATAACGAAGACAAGACTGTTATTGTCACTGTAAATGGGGAGATATATAACCATAATGAACTGAGACAGAAACTGAGTTCCCACCAATTTCGAACTGGAAGTGACTGTGAAGTGATTACTCATCTATATGAGGAATATGGAGAAGAATTTGTTGATATGCTGGATGGGATGTTCTCCTTTGTCCTTCTTGACACTCGAGATAAAAGCTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTACTTGGGCTGGGGCCTTGATGGTTCAACATGGTTTGCATCTGAAATGAAAGCTTTGAGTGATGATTGTGAGAGATTCATATCTTTCCCTCCGGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGATGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAGCACCCTATGATCCAGTGATCTTACGTGAGGCTTTTGAGAAGGCTGTAATTAAGAGACTGATGACTGATGTACCTTTTGGAGTTCTTTTGTCGGGAGGACTAGACTCATCACTTGTTGCTGCCGTGGCCAATCGTTATTTGGCTCAATCTGCGGCTGCACAACAGTGGGGATCACAGTTACATACTTTCTGTATTGGTCTAAAGGGTTCTCCGGATTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTCGGTACGCGTCACTACGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCACATTGAAACATATGATGTAACAACTGTTAGAGCAAGTACTCCAATGTTTCTCATGTCCAGAAAAATTAAATCCTTGGGAGTCAAAATGGTTCTTTCTGGAGAAGGCTCAGATGAAATATTTGGGGGTTATCTGTATTTCCATAAGGCACCTAACAAGGAAGAGTTTCACCAAGAAACATGTCGAAAAATTAAAGCTTTGCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCAGCATGGGGTGTAGAGGCACGTGTACCGTTCTTGGATAAATCATTTATCAACATAGCCATGGGTATGGATCCAGAGTGGAAAATGATAAGGCCCGATCTTGGAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGACGTTGATAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGATGGTGTTGGGTACAGTTGGATTGATGGCTTGAAGGATCATGCAAAAAGTCAAGTCACAGATGGAATGCTGTTGCATGCTAACTTTGTTTACCCTGAAAACACTCCCACTACAAAAGAGGGATACCTCTATAGGACAATTTTTGAGAAGTTCTTTCCAAAGAATGCTGCAAGGTCAACAGTTCCAGGAGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCTTGGTCAAAAAATCCTGACCCTTCGGGTCGTGCTGCTCTTGGTGTTCATGCAGCAGCATACGAGGATGGTGCAGCGGATACAAAAGTTGCTGAGCCTAAAAATGGGACCCTTTAA 1716 0.4318 MCGILAVLGCVDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIIDPTSGDQPLYNEDKTVIVTVNGEIYNHNELRQKLSSHQFRTGSDCEVITHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGLDGSTWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSAPYDPVILREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVAAVANRYLAQSAAAQQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHYELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKSFINIAMGMDPEWKMIRPDLGRIEKWVLRNAFDVDKNPYLPKHILYRQKEQFSDGVGYSWIDGLKDHAKSQVTDGMLLHANFVYPENTPTTKEGYLYRTIFEKFFPKNAARSTVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAYEDGAADTKVAEPKNGTL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0472 571 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 208 485 - -
Dod04g0472 571 TIGRFAM asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 366 IPR006426 GO:0004066|GO:0006529
Dod04g0472 571 Gene3D HUPs 195 514 IPR014729 -
Dod04g0472 571 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Dod04g0472 571 PANTHER ASPARAGINE SYNTHETASE 1 562 - -
Dod04g0472 571 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Dod04g0472 571 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Dod04g0472 571 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Dod04g0472 571 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Dod04g0472 571 PIRSF Asn_synthetase_glu-h 356 517 IPR006426 GO:0004066|GO:0006529
Dod04g0472 571 PIRSF Asn_synthetase_glu-h 1 361 IPR006426 GO:0004066|GO:0006529
Dod04g0472 571 CDD AsnB 2 192 IPR033738 -
Dod04g0472 571 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Dod04g0472 571 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 1 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0472 Dod-Chr4 6684812 6690712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0472 2 259 PRT Gene Family AT4G34740 26.498 1.75e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0472 K01953 - gmx:732660 1067.37