Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0461 ATGACGCAGCAGAATGTGGTAGTGCCTGACACCAAATCCGGAGCTGCGCTTATACCAACAATTCCACAAAAGCCACCGGCGGCGCCTGGAGGGTACATTTCCATTTCAAGGAGTAGGAGGTTCCTCAAGAACCTTGAGATCAATGGAGAGCACAGAATCAATGCATGGATTGAGTCCATGAGAGCCTCCTCCCCTACCCATCTTAAGTCCGCACCTTCTTTCTCCGAAGAGCAAAGCTCCTGGATTCTTCACCATCCATCGGCATTAGACATGTTTGACCAAATTATGGATGCATCAGAGGGAAAGCAAATTGTCATGTTTCTAGACTATGATGGCACACTGTCCCCTATAGTTGACGACCCTGACCGTGCTTTTATGTCCAACTCGATGAGAAAAACAGTGAGGAAGCTCGCAAGGTGTTTCCCTACTGCTATAGTGACTGGCAGATGCAAAGACAAGGTCTACAATTTTGTTCGGTTGGCAGAGCTATATTATGCTGGGAGCCACGGCATGGATATTAAAGGGCCAACAAGAACCTCCAAATACAACAAAGATAGTAAAGCAGAAACAGTTCTTTTTCAACCCGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACGAGAAATTGGTTGATAAGACGAAATCGACACCTGGAGCCAGGGTTGAGAATAACAAGTTCTGCGTCTCGGTTCATTTTCGGTGTGTTGATGAAAAGATATGGAGTGAACTGGCTCACCAAGTGAAATCAGTGTTAAAAGAGTACCCGAAGCTTCGTCTTACCCAAGGAAGGAAGGTATTAGAGATTCGCCCCACTATTAAATGGGACAAAGGCAAAGCCCTGGAATTTCTATTGGAGTCACTCGGATTTGCCAACTGTAGTGAAGTCTTTCCTGTTTACATTGGTGATGATCGAAGCGATGAAGATGCGTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTTCCAAAGGACACAAGTGCATCTTACTCTTTACAAGAACCCAATGAGGTGATGGACTTTCTCCAACGCTTGGTGGAGTGGAAACAAGAATCCATGCGAGCACGATCCCGGGTGTAA 1098 0.4545 MTQQNVVVPDTKSGAALIPTIPQKPPAAPGGYISISRSRRFLKNLEINGEHRINAWIESMRASSPTHLKSAPSFSEEQSSWILHHPSALDMFDQIMDASEGKQIVMFLDYDGTLSPIVDDPDRAFMSNSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRTSKYNKDSKAETVLFQPASEFLPMIDEVYEKLVDKTKSTPGARVENNKFCVSVHFRCVDEKIWSELAHQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGFANCSEVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMDFLQRLVEWKQESMRARSRV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0461 365 Pfam Trehalose-phosphatase 107 341 IPR003337 GO:0003824|GO:0005992
Dod04g0461 365 CDD HAD_TPP 105 345 - -
Dod04g0461 365 Gene3D - 104 198 IPR023214 -
Dod04g0461 365 Gene3D - 204 364 IPR023214 -
Dod04g0461 365 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 106 317 IPR006379 -
Dod04g0461 365 SUPERFAMILY HAD-like 105 354 IPR036412 -
Dod04g0461 365 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 365 IPR044651 GO:0004805|GO:0005992
Dod04g0461 365 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 365 - -
Dod04g0461 365 TIGRFAM T6PP: trehalose-phosphatase 102 352 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0461 Dod-Chr4 6472020 6475617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0461 106 351 Trehalose Biosynthesis Gene Families AT1G60140 27.444 6.14e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0461 K01087 - gmx:100794430 645.195