Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0460 ATGGCAGCAGCTATAGATATCTACAATAATAGCATCATGGCAGTACCAGAATATTTCTCATCAGACCCTTGTAGTGAAGAGTTGATGAAAGCACTTGAGCCTTTTATGACAAGTGATGATTCATCTAATAATTCTTCCTTGTCCACTTCTTCTTCCTCCCCTGATTCATCATCACACCCTTATTCCTTCACCTCTTACAATTACCCTTCATCATCATCATCATCATCACTTCCTTCACCTTCTTCTTCTTTTCCCTCTTTGTATCCTAATAACTTCTCAGCATCCCCATCATCTACCACTCGAAGTTCTCTAAAACTCAACCAACTCACCCCATCTCAAATTCTCCAAATCCAAGCTCAATTTCATGTTTCACAACAACAACAAAGACATCATGTAGCTGACATGGTCCATCACAAAAGCCCACAACAACAACATGCTTTTTTCCTTGGCCCAAAACCTGTCCCCATGAAGCAGGTGGCAGGTTCCCCTGCGGTGAAGCCCACGAAGCTTTACCGTGGGGTGAGGCAGAGGCATTGGGGGAAATGGGTAGCTGAGATAAGGCTCCCTAAGAACCGAACCCGTCTTTGGCTTGGAACATTTGATACAGCTGAGGAAGCAGCTTTGGCTTATGACAACGCAGCTTTTAAGCTGAGGGGTGAGCTTGCAAGGCTCAATTTCCCTCATCTACGCCACCATGGAGCACATGTTTATGGTGACTTTGGGGACTACAAGCCTTTACCCTCTTCTGTGGATGCAAAGCTCCAAGCTATTTGTCAAACCTTGGCTTCCAATCCAAAGACTCCAGAGAGAGCAGAAAAGAACTGCAAGGTTGCGGTGGATACAATTACAAAGAATAAGGTTGAGATTCTTGGAAAGGCTAAGTTGAAGGAGGAGTGTGACATCATGGAACAATCAAATCAGTTTGAGGATTATAAGGTGGAGAAGCCAGTGTTGTCCGATGAGTCGACATCATCATCTGCTGGTTTGTCTTCGCCTGAATCCGATATCACTTTCTTGGATTTCTCGGATTCTAATGGGATTGATAACCTTGGATTAGACTTGGAGAAGTACCCTTCTGTGGAGATCGATTGGGCAGCTATATATGAGTCCTGA 1113 0.4429 MAAAIDIYNNSIMAVPEYFSSDPCSEELMKALEPFMTSDDSSNNSSLSTSSSSPDSSSHPYSFTSYNYPSSSSSSSLPSPSSSFPSLYPNNFSASPSSTTRSSLKLNQLTPSQILQIQAQFHVSQQQQRHHVADMVHHKSPQQQHAFFLGPKPVPMKQVAGSPAVKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGELARLNFPHLRHHGAHVYGDFGDYKPLPSSVDAKLQAICQTLASNPKTPERAEKNCKVAVDTITKNKVEILGKAKLKEECDIMEQSNQFEDYKVEKPVLSDESTSSSAGLSSPESDITFLDFSDSNGIDNLGLDLEKYPSVEIDWAAIYES* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0460 370 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677
Dod04g0460 370 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700|GO:0006355
Dod04g0460 370 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Dod04g0460 370 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Dod04g0460 370 CDD AP2 169 229 IPR001471 GO:0003700|GO:0006355
Dod04g0460 370 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 368 - -
Dod04g0460 370 Pfam AP2 domain 171 220 IPR001471 GO:0003700|GO:0006355
Dod04g0460 370 MobiDBLite consensus disorder prediction 36 66 - -
Dod04g0460 370 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700|GO:0006355
Dod04g0460 370 MobiDBLite consensus disorder prediction 30 66 - -
Dod04g0460 370 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 368 - -
Dod04g0460 370 SMART rav1_2 170 233 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0460 Dod-Chr4 6423685 6425141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0460 3 367 AP2-EREBP Transcription Factor Family AT4G39780 43.869 3.01e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod04g0460 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0460 K09286 - tcc:18611594 318.161