Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0447 ATGGGATTGAGAGATCGTAGCAGCAGCATGGAGGATCCGGATGGGACATTAGCAAGTGTTGCTCAATGCATTGAGCAGCTGCGTCGGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAGCAGTTATCAGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGATCTTTGAATGTGAAGATACAGGCAGCAACTGTCCTGGGCTCCCTTTGCAAAGAAAATGAGCTGAGGGTAAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTCTATTGAAGTCCAGTTCTGCCGAAGGTCAAGTAGCTGCTGCCAAGACTATTTATGCTGTATCCCAAGGTGGTGTCAAAGATCACATTGGATCAAAAATATTTTCAACTGAAGGAGTTGTGCCAGTGCTCTGGGAGCAGTTGCAGAAGGGCTTGAAGACTGGAAATGTAGTTGACAATTTATTGACTGGAGCGTTGAAAAATCTCTCTAGCAGTGCTGAGGGATTCTGGAGTGCCACAATACAAACTGGAGGGGTGGACATATTAGTGAAGTTACTGACAACAGGACAGTCTGGCACTCTAGCCAATGTGTGCTTTCTACTTGCCTGCATGATGATGGAAGATGCATCTGTTTGTTCAAAAGTGTTGACAGCAGATGTGACAAAACAACTTCTCAAGCTTCTGGGCCCTAGTAATGATGCCCCCGTTAGAGCTGAAGCTGCTGGTGCTCTTAAGTCTCTGTCTGCTCAGTGCAAAGATGCAAGACGGGAGATAGCCAATTCTAATGGCATTCCTTCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACGTTAGGGGCTTTAGCTTCAGCCCTTATGATATATGACAACAAGGCAGAATCTAATAGAGCGTCAGATCCTTTGGTAGTTGAGCAGATGTTACTCAATCAATTTAAACCTCAGTTGCCCCACCTTGTGCAGGAGCGAACTATTGAAGCCCTGGCTAGTTTGTATGGTAATCCCATACTCTCAATCAAACTTACAAATTCTGATGCAAAGCATTTGCTTGTGGGTTTAATAACAATGGCTGCCAACGAAGTGCAAGATGAGCTGCTAAAAGCTCTCTTGACACTGTGCAACAGTGAAGGCAGTCTATGGCATGCAGTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTTCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTCAGGAATCTATGCAATCACAGTGAGGACATACGTGCATGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCGCAAATGGGAAGGAGATTGCTGCAAAGACCTTGAATCACTTAATCCATAAATCTGATACTGCAACTATCAGTCAGCTTACAGCATTATTGACAAGCGAACTTCCGGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAATATGCTTTCTGTTGTTCCTCTTAGTGATATTTTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATCAGCTTTATCAGGAATTTTTGAAACAAGGAAAGATGTGCGCGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGTCATGAAGTTGCTTAACGTTGAATCTGAAAGCATCTTAATGGAGTCCTCACGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGAGATGTAGCTGCTATTGCTAGAGATGCATTATCTTCACTAGTTGCACTGGCTAACAATTCGGTTTTGGAAGTGGCAGAGCTGGCAACATGTGCCGTGGCAAATCTTATTTTGGATAGTGAAATTGCAGAGAAAGCTGTTGCAGAAGAAGTTATCATTCCTGCTACCAGAGTATTACGTGAAGGCACAATTGCTGGAAAAACACATGCTGCAGCATCAATCGCCCGTCTCTTACATTCTAAGCAGGTTGATTATGCTATAACTGATTGTGTGAATCGTGCTGGCACTGTTCTCGCATTAGTTTCTTTCTTAGAATCTGCTATTAATGGATCTGCCACCACATCTGAGGCTCTAGATGCACTTGCCATTCTGTCCAGGTCAGACGAGACCAGCACACATAGTAAACCTGCATGGACTGTTTTGGCTGAATTCCCTAAAGGCATAAGCCCAATAGTCCTGTCTATTGTTGATTCAACACCAATATTGCAGGATAAAGCTATTGAGATATTATCTCGATTATGCAAGGATCAGCCTCTTGTCTTGGGGGACACTGTTGCTACTTACTCTGGATGTATATCTTCAATAGCTAAGAGGATAATCAGTTCCACTTCCGCAAATGTAAAAGTCAAAATTGGGGGAGCTGCAGTTCTTGTTTGTGCTGCAAAAGTAAATCATCAGAGACTTGTGGAGGATCTCAATTTATCAAACTTGTGTGCTGATCTTGTTCGGTCTCTTGTTGATATGCTTATTTCTTCGCAGTCTTCATTGAGCAATCAAGGTGATGCCAACAAAGATGTAATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTCAACCCAACACTGGTACTGCCATTATATCTGATGCCAACTTAGCTATATGGTTACTGTCTATTCTTGCTTGCCATGATGAAAATAGTAAAATTGCAATAATGGAGACTGGAGCAATTGAGGTTCTCACTGACAGGATCTCAAATTATTTCTTACAATATAGTCAGATAGATGATAAAGAAGACAGCAGCATGTGGATTTGTGCTCTGTTGTTGGCAGTATTATTCCAAGATAGAGATATCATACGAGCAAATGCAACCATGAAATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAGTCAGCAAATAGATATTTTGCAGCACAATCAATAGCTAGCCTGGTCTGTAATGGTAGCAGGGGAACACTTCTTTCTGTAGCAAATTCTGGGGCAGCAGGTGGACTTATCTCGTTGCTTGGCTGTGATGATGCTGATATACACGATCTTCTGGAACTGTCAGATGAGTTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCGATACCTGCCCTAGTTGATCTACTCAAACCAATTCCAGATCGCCCAGGGGCACCATTTTTGGCACTTGGGCTTTTGACTCAGCTTGCTAGAGATTGTCCGTCAAATAAGATTGTTATGGTAGAGTCTGGGGCCTTAGAGGCAATTACCAAATATCTTTCACTGGGTCCCCAGGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCTGAGATACGAAGACATGAATCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTCTCTGCTGACCATGTTAGAAATGCAGATACTGCTCGACAAGCTGTTCAACCGCTGGTAGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCGTTGGTTAGGCTACTCAGTGAAAACCCTTCTAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATACTTTCATCAAATTGTTCAATGGATCTCAAAGGAGATGCTGCTGAACTGTGTTGTGTTCTCTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCGCGTTGTGTTGAACCTCTGGTCTCTCTCCTTGTGAGTGAGTTTAGTCCAGCTCAACAATCAGTTGTTCGTGCATTGGATAAGCTTGTTGATGATGAACAACTGGCTGAGTTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTCTATGGTAGGAACTATGTACTTCATGAAGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAGAGCATACTTGATATCCTTCATGAAGCACCTGATTATCTATGTACAGCTTTTGCAGAACTGTTGCGTATATTGACCAACAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTTGAACCCCTCTTTTCGCTGCTGACAAGACAAGAATTTGGACCTGATGGACAACATAGTGCGTTGCAGGTTTTGGTTAATATCTTAGAACATCCACAATGTCGTGCTGATTACACATTGACTTCTCACCAATCTATTGAGCCACTTATCCCCTTGCTTGATTCTTCAATATCGGCAGTGCAACAGTTGGCTGCTGAGCTTCTGTCACATCTACTTTTAGAAGAACACCTTCAGAAGGATCCAGTGATTCAGCAAGTTATTGGCCCTCTTGTACGAGTTCTTGGTTCTGGTATACATATTCTGCAGCAGAGAGCTGTAAAGGCCCTAGTCAGTATTGCATATATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATCTCCAAAGTGATATTGCAAGCTGATCCATCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTCTGGCATGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTACCTGTTGCTGTTTTAGTAAGGTTGCTTCGATCTGGCTCTGAGAGCACAGTTATTGGTGCGTTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCACCAGAGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTGAAGATAAGAGAAACCAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCCTGGACCCACAAACCCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGTGATGTATTCCAGAATGAGGGTCTTGCTCGGACAAGTGATGCTGTTTCAGCTTGCCGTGCTTTAGTGAATGTGCTTGAAGAGCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTACAAAACCTTGTGATGTACAGCCGGTCAAACAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGCGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCCAGTGAAACAGTCAGAGCAATAACTGCTGCAATCGAAAAGGATTTATGGGCTACTGGAACTGTGAATGAGGAGTATCTAAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACCCTTAGCATTCCTCATCTGGTTACATCCTTAAAGACAGGCTCCGAGGCTGCTCAAGAAGCTGCCTTGGAGGCACTTTCTCTGCTCAGGCAAGCTTGGTCAGGATGCCCAGCAGAGGTTTCAAGAGCTCAGTCCATAGCAGCCGCAGATGCTATTCCTTTGCTGCAGTATTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAGGGCAGAATTCTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGTAAGCTTACACTTGGCAACACTCCTCCAAGGCAGACCAAGAGTTCATTCGGGAAAGTGACAATCCAAATTGATCGGGTGGTAATGCTGGGAGCAGTATCTGGAGAGTACACACTGTTGCCGGAAAGTAAAAGCGGCCCCTCGAGGAATTTAGAAATAGAATTTCAGTGGTCCAACAAGTGA 6213 0.4336 MGLRDRSSSMEDPDGTLASVAQCIEQLRRSSSSMQEKEYSLKQLSELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSAEGQVAAAKTIYAVSQGGVKDHIGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSAEGFWSATIQTGGVDILVKLLTTGQSGTLANVCFLLACMMMEDASVCSKVLTADVTKQLLKLLGPSNDAPVRAEAAGALKSLSAQCKDARREIANSNGIPSLINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESNRASDPLVVEQMLLNQFKPQLPHLVQERTIEALASLYGNPILSIKLTNSDAKHLLVGLITMAANEVQDELLKALLTLCNSEGSLWHAVQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSELPESKVYVLDALRNMLSVVPLSDILREGSAASDAIDTMIKLLSSTKEETQAKSASALSGIFETRKDVRESSIAVKTLWSVMKLLNVESESILMESSRCLAAIFLSIKENRDVAAIARDALSSLVALANNSVLEVAELATCAVANLILDSEIAEKAVAEEVIIPATRVLREGTIAGKTHAAASIARLLHSKQVDYAITDCVNRAGTVLALVSFLESAINGSATTSEALDALAILSRSDETSTHSKPAWTVLAEFPKGISPIVLSIVDSTPILQDKAIEILSRLCKDQPLVLGDTVATYSGCISSIAKRIISSTSANVKVKIGGAAVLVCAAKVNHQRLVEDLNLSNLCADLVRSLVDMLISSQSSLSNQGDANKDVISICRHTKEANDGQPNTGTAIISDANLAIWLLSILACHDENSKIAIMETGAIEVLTDRISNYFLQYSQIDDKEDSSMWICALLLAVLFQDRDIIRANATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCDDADIHDLLELSDEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEAITKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYSAAKALESLFSADHVRNADTARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAQQSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCTAFAELLRILTNNASIAKGPSAAKVVEPLFSLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQSIEPLIPLLDSSISAVQQLAAELLSHLLLEEHLQKDPVIQQVIGPLVRVLGSGIHILQQRAVKALVSIAYIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLACILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQSEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDVFQNEGLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEAAQEAALEALSLLRQAWSGCPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQERAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0447 2070 Gene3D - 1773 1984 IPR011989 -
Dod04g0447 2070 SUPERFAMILY ARM repeat 616 945 IPR016024 -
Dod04g0447 2070 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 2024 - -
Dod04g0447 2070 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 2024 2070 - -
Dod04g0447 2070 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 2024 2070 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Dod04g0447 2070 Gene3D - 570 967 IPR011989 -
Dod04g0447 2070 SUPERFAMILY ARM repeat 21 728 IPR016024 -
Dod04g0447 2070 Gene3D - 1653 1761 IPR011989 -
Dod04g0447 2070 Coils Coil 254 281 - -
Dod04g0447 2070 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 2024 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Dod04g0447 2070 Pfam Armadillo/beta-catenin-like repeat 482 521 IPR000225 GO:0005515
Dod04g0447 2070 Pfam Armadillo/beta-catenin-like repeat 61 91 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 93 133 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1187 1228 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1397 1437 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1356 1396 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 482 522 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 268 317 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 603 643 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 51 92 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 524 564 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1272 1310 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 225 266 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 438 480 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1439 1479 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1815 1855 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1524 1565 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 774 816 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1688 1727 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1567 1606 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 1142 1185 IPR000225 GO:0005515
Dod04g0447 2070 SMART arm_5 690 728 IPR000225 GO:0005515
Dod04g0447 2070 SUPERFAMILY ARM repeat 983 1116 IPR016024 -
Dod04g0447 2070 Gene3D - 1325 1652 IPR011989 -
Dod04g0447 2070 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1154 1198 IPR000225 GO:0005515
Dod04g0447 2070 SUPERFAMILY ARM repeat 1279 1610 IPR016024 -
Dod04g0447 2070 SUPERFAMILY ARM repeat 1538 1985 IPR016024 -
Dod04g0447 2070 Gene3D - 373 569 IPR011989 -
Dod04g0447 2070 Gene3D - 979 1324 IPR011989 -
Dod04g0447 2070 Gene3D - 8 367 IPR011989 -
Dod04g0447 2070 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Dod04g0447 2070 SUPERFAMILY ARM repeat 1144 1335 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0447 Dod-Chr4 6170018 6180327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0447 453 577 U-box Gene Family AT3G46510 32.540 1.28e-07 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0447 - - gmx:100816765 3561.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2436 04 48151193 48164793 Dod04g0447 04 6170018 6180327 PCT