Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0438 ATGGAAAATAATCTCTCTAGGCTCTTCAATCAGCTCTGCGGCAAAATAATAGTCCTGTTGGCATTCCTGCTAATAGAACTCTTTTTCCTCGTCAAGAAGCTAAAGTCATCAGCAACAGGCCCAATCACCACAAAGCAATACCTCAAATTCATCGAGGAGAAGAACCCAACAATTTGCTACACAAAGAGGCTGAAGCCACGGCACGTGGAGTGCACGGTGTGCCTGTCGGAGTTCAAGGAAGGGGAGAAGGTGAGGAACCTCAAGTGCCAACACACTTTCCACAGGGATTGCTTGGACAAGTGGTTGCAAGAGTATTGGGCTACATGTCCACTTTGCAGGGAAAAAGTGTTGCCAGATGATGTTGTTTCAAAGCACCGTGAGCTTCGAAATCTGCAGGCTGGTTCTAGTGAGAATGTTGAGAGGCTTCCCTATTTGCTGGCTGCATTGCGTGGTGGTAATTCTTTGAGCCGATAG 474 0.4726 MENNLSRLFNQLCGKIIVLLAFLLIELFFLVKKLKSSATGPITTKQYLKFIEEKNPTICYTKRLKPRHVECTVCLSEFKEGEKVRNLKCQHTFHRDCLDKWLQEYWATCPLCREKVLPDDVVSKHRELRNLQAGSSENVERLPYLLAALRGGNSLSR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0438 157 SMART ring_2 71 112 IPR001841 -
Dod04g0438 157 CDD mRING-H2-C3H2C2D_ZSWM2 70 113 - -
Dod04g0438 157 PANTHER - 4 153 - -
Dod04g0438 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 118 IPR013083 -
Dod04g0438 157 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Dod04g0438 157 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 153 - -
Dod04g0438 157 SUPERFAMILY RING/U-box 49 119 - -
Dod04g0438 157 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0438 Dod-Chr4 6076377 6077430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0438 70 124 C3H Transcription Factor Family AT1G15100 56.364 4.40e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0438 K16282 - gmx:102668078 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2439 04 48195398 48196095 Dod04g0438 04 6076377 6077430 PCT