Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0420 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCACTGCATGAGCAACTGGAACTTCTTCGTTCTATTACCAACTCTCATGCTCTAAACAAAACCTCGATTATAGTCGAGGCATCAAAGTATATTAAAGATCTAAAGCATAAAGTAGAAAGACTGAACCAAGACATGGCCGCTGCACAAACATCAAGTGACCAAAATCCTTTGCCTATGGTCACAGTAGAAACCCTAGAAAAGGGATTTCTTATAAATGTTTTTTCAGCAAAGAGCTGCCCAGGTTTGCTTGTTTCCATATTGGAGTCCTTTGAAGAGATGGGTCTTAATGTGCTGGAAGCTAGGGTTTCTTGTACGGGCACTTTTCGATTTCAAGCAGTTGGAGGAGAAAATGAAGAACATGGTGAGGCTATTGATGCACAAGCCGTGAAACTAGCAGTGGGACAAGCAATAAGGAACTGGAGCCAAAGTACTGATGAACAGTGA 471 0.4183 MVSREQKRAALHEQLELLRSITNSHALNKTSIIVEASKYIKDLKHKVERLNQDMAAAQTSSDQNPLPMVTVETLEKGFLINVFSAKSCPGLLVSILESFEEMGLNVLEARVSCTGTFRFQAVGGENEEHGEAIDAQAVKLAVGQAIRNWSQSTDEQ* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0420 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 154 - -
Dod04g0420 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 65 IPR036638 GO:0046983
Dod04g0420 156 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 154 - -
Dod04g0420 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0420 Dod-Chr4 5551924 5554399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0420 11 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.000 1.13e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0420 - - tcc:18600910 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0963 08 11946023 11947736 Dod04g0420 04 5551924 5554399 ECH
Dod01g0979 01 18082213 18082942 Dod04g0420 04 5551924 5554399 ECH
Dod07g1654 07 44118378 44120571 Dod04g0420 04 5551924 5554399 ECH
Dod05g0432 05 6068943 6070760 Dod04g0420 04 5551924 5554399 ECH
Dod04g0420 04 5551924 5554399 Dod04g0420 04 5551924 5554399 ECH
Dod04g0420 04 5551924 5554399 Dod08g0629 08 7529280 7531247 PCT