Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0397 ATGGCTCAAAGAAAAAGAGGTTTACATCAATGGAAGCATCCATTCGATGCTTATCCTTTTGAGTCTTTTTTGTTTGGCTCATGGCAAGCTGTGGAGCGCATAAAAATTGAGTCAGGAATGATGACCTTACATTTTAAGGATAACCACCGTCTGACTATGGAGAAAGGACCCTCTTCAGACATTCGGATAAGGTCAAGGAAAGCAACTTTATCAGATTGTTCTTGCTTTTTAAGACCTGGGATTGACATATGTGTACTGTCAGCCCCTAAATGTAGTCATGATCGTGGTGAATTTACTCCTGAACCTGTGTGGGCTGATGCTAAAATAAATTCCATACAGAGAAACCCCCATGACTCAGAATGTTCATGTCAGTATTATGTCAAGTTCTATGTGAATCAAGGTTCACTTGGTGGTACACAAAGAACTCTCAGTAAGGAGGCTGAAGTAGTTGGAATAAACCAAATTTCCATCCTCCAAATTATTGACCGTAATTCATCTGAAGATAGTCCCTATCGGTGGGACTCATCTATGGACTGCTCCTCAGCACCCCAAACTAAATTGCTTCTTGGAAAATTCGTATCTGATGTTTCATGGTTAACTGTTGCATCCGTTTTAAGGAAGGTTTCATTTGGAATAAGATCTGTAGACAACAAGATTGTGTATCAAGTCTTGGGAGGTAATGCTAATGCCTCTTCATCCAACACTGATTCTAATATAAATGTTGTGAACTTCAAAGTAGACCATAAAGGTGTAGTACAACCGTTTGTTGCTCAAGTTGTTGCATCTGAAACCAAAAGAATTGGCTACAAACATGATTCACCTGCAGATGAAGCTCCTCCATCTTGTAATGTTGAGGGCTTAAGGCGTTCCAAGCGGCGGCATATACAACCTGAGCGTTACCTTGGTTGTGATGTTTCCAAGTTGGAGAATGTTGGTTCAATTAGAGGCCTCAGGCCATACAAGGTAGACACATGGAAAGATAATGAAGAGCCAGTGCCATTATTAGCATGGGAGCCCGCTTTCCAAGAAAAGTGTCCAAAAGAAGATGCTGTTAACAACAATGGCAAAAAGTTCGATAAGTGGAATACTGGCAAGGAGATTATAGTGTATCAAAGGAGGAAGAAAACCAACAAGGAAGGGAAGTTAGTCGTTGTCATTCAACCTGAAGATCATACTCCACTTGCTACTATTCCTCCTCCATATAAAGTTGATCTAGTTCCACATTTGCTTTATTCTCTCGATGACGAGGACAATACACAAGAAATTGGTGGTGCAGAAAAGGTTGATGAATTTACTTCAGGACGCTATTATAGTTATGGCGCCCCTAAGCTGCACAGAAAGAATTCATTTGATCCAGATGATATGGATCTTGAACCTAGATGGGAAGGGATAAACCAGAAAAATAGAGTTCAAGAGAAAAGATATCATTCAACATATTCAAGAAATAGAAATCATGATGAAGAAAGGGGTTATAAAGACAGAACCTTAAATGCAGCTGCGTACAAGGAAATGATAGATTCATACCTGGCGAATATTAATAAAATACCAACTGAGGAAGAACCAACTCTAAGGGATCAGTGGATTGGAACAAGCAACTATGAGCAAGAGAAGGAAGAAGGAGCATATCAAGAAAAGGGTGATGATGATGATGATGAAGGAATGCATGAAACAGATGAGTTGTGGAGAGAGATGGAAACATCAATGACATCAATTTATCTTCAAGAAGAAACAAACGATGCCGTTCTTGCTAAGACTACAGAAAATTCCAGAAAAGTTTGTGAGCACGACAACAGATTGGATGAAGAAATTGGAATTTACTGCATTAGATGTGGCGTTGTGAGAGAGGACATTGAAAGTATCACCCCAGACTTTTTGCCACGCCAAACGAGGTGCTGGCAAGAGGAGCAATGCACTGGAGAACAATCAGAGGAGCCAAAGGCTGATGAAGATGATGGTGATCTGGAATTTTTCAAGACTAAAGCTTCTACTGATGAACCTATAATTCAAGAAAATGATAATATCTGGGGATTGATTCCGGAGCTTAGAGAAAAGATGCATGACCACCAAAGGAAAGCTTTTGAATTTCTATGGCAAAACATTGCAGGGTCCATGGAACCATCACTGTTGGAATCAGAATCCAGAAACAGTGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGGAAAACTTTTCTCATCATTTCCTTTCTTGTTAGCTACTTGAAGCTATTCCCAGGGAAAAGGCCATTGGTTTTAGCTCCAAAAACCACACTGTACACTTGGTATAAGGAGTTCATCAAATGGGGGATTCCTATCCCAGTGTATCTGATTCATGGTCGCAGATCCCAAAGAGAGTTCAAGGACAAACTAGTGTCCATTCCTGGGGTTCCAAAGCCAACTAATGATGTCAAGCATGTTTTGGATTGTCTACAAAAGATACAAAAGTGGCATGATCACCCCAGTGTTCTAGTCATGGGATACACTTCATTCTTATCATTGATGAGAGAGGATTCAAAGTTTTCACACAGGCAGTACATGGCTAAAGCACTTAGGGAGAGTCCTGGGATGCTGATACTTGATGAAGGGCACAATCCAAGGAGCACTAAATCAAGACTGAGGAAAGTTCTGATGAAGGTAGGGACAGAACTGAGGGTGTTGCTCTCTGGTACATTGTTTCAGAACAATTTCTGTGAGTACTTCAACACATTGTGCTTGGCAAGACCAAAGTTTGTCGATGAAGTGCTAAATGAACTAGACATCAATTATGAGAAGAAGAAGATAGCAGAGAAAGCGCGCCATTTACTCGAGGCGCGTGCTAGAAAACACTTCCTAGACAAAATTGCCAAGAAGATTGACTCAAACGATGGTGAGGAGAGGATGCAGGGCCTAAACTTGCTGAGAAAACTCACAAATGGTTTCATTGATGTTTATGATGGTGGGAACTTCGACACACTCCCTGGTTTACAGCTTTATACATTGGTGATGAACACAACTGACATACAGCATGAGATTCTGAATAAACTGCACCAGAAAATGGCTCATTGCACTGGATACCCTTTGGAGCTAGAGCTTCTGATAACACTTGGATCAATACATCCATGGCTGGTGAAAACAGCAGCATGTGCTTTTAAGTTCTTCACTTCTGAGCAATTGAGGGGGCTGGACAAATACAAGACTGATCTGAGGATAGGGTCAAAAGTGAGATTTGTTCTGAGCCTTGTCCACCGTGTCTTCATGAAGGAGAAGATCCTCATCTTCTGCCACAACATCGCACCAGTGAAGTTGCTAGTGGAACTAATTGAGACGTGTTTCAGATGGAAGAAAGATAGAGAGATCCTTGTGCTTAATGGTGAAATGGAGCTTTTTGAACGTGGGAAAGTGATAGATAAGTTTGAGGACCCTTGTGGGGCATCAAGGGTGCTGTTTGCTTCAATCACAGCATGTGCTGAAGGCATTAGTCTCACTGCAGCTTCAAGGGTGATCATGTTGGATTCAGAGTGGAACCCATCAAAGACAAAGCAGGCTATTGCAAGGGCTTTCAGGCCTGGTCAGCAGAAGATGGTTTATGTGTATCAGCTATTGGCATCAGGGTCATTGGAGGAAGATAAGTACAGGAGAACCACTTGGAAAGAGTGGGTGTCTAGCATGATCTTCAGTGAGGACTTTGTGGAGGACCCTTCCCAATGGCAAGAACAGAAGATTGAGGATGATGTGCTTAGGGAGATGGTGGAGGAGGACAAGTCTAAAGCATTCCGTATGATCATGAAGAATGAAAGGGCTTCTACAAACTGA 3792 0.4172 MAQRKRGLHQWKHPFDAYPFESFLFGSWQAVERIKIESGMMTLHFKDNHRLTMEKGPSSDIRIRSRKATLSDCSCFLRPGIDICVLSAPKCSHDRGEFTPEPVWADAKINSIQRNPHDSECSCQYYVKFYVNQGSLGGTQRTLSKEAEVVGINQISILQIIDRNSSEDSPYRWDSSMDCSSAPQTKLLLGKFVSDVSWLTVASVLRKVSFGIRSVDNKIVYQVLGGNANASSSNTDSNINVVNFKVDHKGVVQPFVAQVVASETKRIGYKHDSPADEAPPSCNVEGLRRSKRRHIQPERYLGCDVSKLENVGSIRGLRPYKVDTWKDNEEPVPLLAWEPAFQEKCPKEDAVNNNGKKFDKWNTGKEIIVYQRRKKTNKEGKLVVVIQPEDHTPLATIPPPYKVDLVPHLLYSLDDEDNTQEIGGAEKVDEFTSGRYYSYGAPKLHRKNSFDPDDMDLEPRWEGINQKNRVQEKRYHSTYSRNRNHDEERGYKDRTLNAAAYKEMIDSYLANINKIPTEEEPTLRDQWIGTSNYEQEKEEGAYQEKGDDDDDEGMHETDELWREMETSMTSIYLQEETNDAVLAKTTENSRKVCEHDNRLDEEIGIYCIRCGVVREDIESITPDFLPRQTRCWQEEQCTGEQSEEPKADEDDGDLEFFKTKASTDEPIIQENDNIWGLIPELREKMHDHQRKAFEFLWQNIAGSMEPSLLESESRNSGGCVISHSPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWGIPIPVYLIHGRRSQREFKDKLVSIPGVPKPTNDVKHVLDCLQKIQKWHDHPSVLVMGYTSFLSLMREDSKFSHRQYMAKALRESPGMLILDEGHNPRSTKSRLRKVLMKVGTELRVLLSGTLFQNNFCEYFNTLCLARPKFVDEVLNELDINYEKKKIAEKARHLLEARARKHFLDKIAKKIDSNDGEERMQGLNLLRKLTNGFIDVYDGGNFDTLPGLQLYTLVMNTTDIQHEILNKLHQKMAHCTGYPLELELLITLGSIHPWLVKTAACAFKFFTSEQLRGLDKYKTDLRIGSKVRFVLSLVHRVFMKEKILIFCHNIAPVKLLVELIETCFRWKKDREILVLNGEMELFERGKVIDKFEDPCGASRVLFASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLASGSLEEDKYRRTTWKEWVSSMIFSEDFVEDPSQWQEQKIEDDVLREMVEEDKSKAFRMIMKNERASTN* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0397 1263 SMART ultradead3 681 921 IPR014001 -
Dod04g0397 1263 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1235 IPR001650 -
Dod04g0397 1263 MobiDBLite consensus disorder prediction 532 554 - -
Dod04g0397 1263 MobiDBLite consensus disorder prediction 270 289 - -
Dod04g0397 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 710 909 IPR014001 -
Dod04g0397 1263 Gene3D - 988 1263 IPR027417 -
Dod04g0397 1263 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1261 IPR044567 GO:0080188
Dod04g0397 1263 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1261 - -
Dod04g0397 1263 Pfam Helicase conserved C-terminal domain 1066 1182 IPR001650 -
Dod04g0397 1263 Gene3D - 658 951 IPR038718 -
Dod04g0397 1263 CDD DEXHc_ATRX-like 685 950 - -
Dod04g0397 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1247 IPR027417 -
Dod04g0397 1263 Pfam SNF2-related domain 708 940 IPR000330 GO:0005524|GO:0140658
Dod04g0397 1263 CDD SF2_C_SNF 1058 1194 - -
Dod04g0397 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 911 IPR027417 -
Dod04g0397 1263 SMART helicmild6 1098 1183 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0397 Dod-Chr4 5203256 5208754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0397 1112 1201 RAD5 or RAD16-like Gene Family AT5G05130 42.857 1.30e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod04g0397 SNF2_N 1.6e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0397 K10875 - gmx:100811703 1565.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0397 04 5203256 5208754 Dod04g0397 04 5203256 5208754 ECH
Dod04g0397 04 5203256 5208754 Dod08g0652 08 7676760 7678190 PCT