Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0393 ATGGATTCCGACTTCCCAAACAAAGCCTTAACGAGCACGCGTTTCTCCGAGCTGAACCCTCCACTCTCCGAACCGGTCCTCCAAGCCCTATCAGAATCCGGGTTCGAGTTCTGCACGCCGGTTCAAGCCGCCACCATCCCTTTGCTCTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGAAAAACTCTAGCCTTCGTTATCCCTCTCGTCGAGATTCTACGACGCTCCTCTTCTCACCCCAAGCCTCATCAGGTTTTGGGAATAATTATATCCCCTACAAGGGAACTTTCATCTCAAATATATCATGTTGCGCAACCTTTCATTTCAACTTTGGTGAATGTGAAGTCCATACTCCTCGTTGGTGGAGGAGAAGTGAAAGCAGACATGAAGAAGATAGAGGAAGAAGGGGCTAACATATTGATCGGCACGCCTGGGCGTCTATATGACATAATGAATAGGATAGACTTCTTAGATTTGAAGAACTTTGAGATTTTGATTTTAGATGAGGCTGATAGGCTCTTAGATATGGGATTCCAGAAGCAGATAACTTCCATTATATCACTATTGCCCAAGCTTCGCAGAACTGGTCTGTTCTCTGCTACTCAGACTGAGGCTGTTGAAGAGCTTTCTAAAGCAGGACTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAACTTGCAAATGATTCTACATCATTGAAGCAATTGGAATCTTCTAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGTGAGGCAGATAAGAAACCATCACAGCTAGTAGATGTCCTTGTTAAGAACTGCTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTCCTTCCTCGCCTTTCTGTTTTGAGAGGCTTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAAGCATTAGCCTTGTTTACATCTATTTCAAATGGAGTTCTTCTATGTACGGATGTTGCAGCACGCGGACTTGACATACCAGGTGTAGATTGTATAGTTCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCTGTTGTCTTCTTATTACCAAAGGAGGAGTCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGTATATGCTCTAATGATGCATCTGATGTTGTTCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGTGATGTCATGGAGAAAGGAGTCAGGGCATTTGTTTCTTACATCCGTGCTTATAAGGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGATTTGGATTATTACAACTTCCTTCAATGCCAGAGGTAAAACACCACTCACTTTCTACCGAGGGATTTGTACCAGTTGATGATATCAATTTGGAGGACATTAAATACAAGGATAAATCACGAGAGAAACAAAGAAAGAAGAACCTGCAAGCAAAGAAGGAAGCCAAAGAAAAAGAGGTAAAACCTCAGAAACCAAGCAAAACCCCAAATGCACCGACTGTCATGAGGAAGAAAACAGCCCGACAGAGGCGTGCTCAGCAGACAATTGAAGACGAGGAAGAGTTGATGCAAGATTACCGCTTGTTGAAGAAACTCAAGAAAGGGACTATAGACGAGGATGAATATGCCAAGTTGACAGGCGCTGAGGAACTACTCTGA 1770 0.4373 MDSDFPNKALTSTRFSELNPPLSEPVLQALSESGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSSSHPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNVKSILLVGGGEVKADMKKIEEEGANILIGTPGRLYDIMNRIDFLDLKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKLANDSTSLKQLESSKTPSGLHIEYLECEADKKPSQLVDVLVKNCSRKVIIYFMTCACVDYWGVVLPRLSVLRGFSLIPLHGKMKQTVREKALALFTSISNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQESICSNDASDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGFGLLQLPSMPEVKHHSLSTEGFVPVDDINLEDIKYKDKSREKQRKKNLQAKKEAKEKEVKPQKPSKTPNAPTVMRKKTARQRRAQQTIEDEEELMQDYRLLKKLKKGTIDEDEYAKLTGAEELL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0393 589 Coils Coil 539 566 - -
Dod04g0393 589 SMART helicmild6 294 375 IPR001650 -
Dod04g0393 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Dod04g0393 589 SMART ultradead3 34 242 IPR014001 -
Dod04g0393 589 Coils Coil 503 525 - -
Dod04g0393 589 MobiDBLite consensus disorder prediction 501 556 - -
Dod04g0393 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Dod04g0393 589 Gene3D - 3 227 IPR027417 -
Dod04g0393 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Dod04g0393 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Dod04g0393 589 CDD SF2_C_DEAD 254 384 - -
Dod04g0393 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 586 - -
Dod04g0393 589 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Dod04g0393 589 SMART DUF4217_3 413 476 IPR025313 -
Dod04g0393 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Dod04g0393 589 Gene3D - 254 487 IPR027417 -
Dod04g0393 589 PANTHER RNA HELICASE 25 586 - -
Dod04g0393 589 CDD DEADc_DDX55 26 224 - -
Dod04g0393 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Dod04g0393 589 MobiDBLite consensus disorder prediction 501 528 - -
Dod04g0393 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0393 Dod-Chr4 5130058 5135480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0393 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 30.894 5.56e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0393 K14809 - gmx:100801482 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0393 04 5130058 5135480 Dod04g0393 04 5130058 5135480 ECH