Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0391 ATGGGTGGGAATTCCCCGTGTGCTTCATGCAGGCTTCTGAGACGCCGTTGCGCCAAGGATTGCATCTTTGCACCTTATTTCCCTTCCGATGAGCCCCAAAAGTTCGCCATAGTTCACAAGGTCTTTGGAGCTAGCAACGTTAGCAAAATGCTGCAGGAGCTTCCGGTTCATCAGAGAGCTGATGCAGTGAGCAGCATAGTGTATGAAGCAAATGCAAGAGTTCGGGACCCTGTGTACGGTTGTGTTGGGGCCATATCTTACCTGCAAAACCAGGTCTCTGAGCTTCAGATGCAGCTTGCGGTGGCTCAGGCAGAGATACTCTGCATCCAGATGCAGCATGAGCCTGTGGTGATGCCAAACCAGCAGATTGACTCGGACCAGAAACCTTACCTTCTCCAAAATGAACTCCCTCCTCAGTACCTCAACTTTGCCTCTTCCAGCAATGTAATCCATGATTCTCTCTCAAGAGACACCATACTTGGACATGACATGGTTTCCTGA 501 0.501 MGGNSPCASCRLLRRRCAKDCIFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSIVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVVMPNQQIDSDQKPYLLQNELPPQYLNFASSSNVIHDSLSRDTILGHDMVS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0391 166 Coils Coil 85 105 - -
Dod04g0391 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Dod04g0391 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 159 - -
Dod04g0391 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 159 - -
Dod04g0391 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0391 Dod-Chr4 5097262 5098258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0391 3 132 AS2 family AT2G30130 81.955 5.28e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod04g0391 LOB 9.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0391 - - lang:109360574 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0391 04 5097262 5098258 Dod08g0656 08 7726537 7727986 PCT