Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0375 ATGAGAGACCCTGTGATTGTATCATCTGGACACACTTATGATAGAATTCCCATTGCAAAGTGGATAAACTCTGGGCATCACACTTGCCCCAAAAGTGGGCAAAGGCTAATTCACAGTGCTCTAATACCCAACTACGCATTGAAGAGTCTTGTCCAGCATTGGTGCTCTGAAAACAAGGTCCTAGTGAATGAGCCTGCTTCATCTCTTTCAGAGGTAAACAGCAGCAAATCTAACTTGAATTTGAATGATGCTGATCATGTTTATGCAAACAAAGCATCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGGAAACTGGCAACTGGCTCAGTTGACATACAAAGGAAAGCTGCATATAAACTTAGGTTACTCGCAAAAAGTTGCACCGATAATCGAAAAATTATAGCTGAGGCTGGTGCTATTCCATTTCTACTGACACTATTAGGTTCCAATGATCCAAGAATCCAGGAACATGCAGTGACAGCCTTGTATAACCTCTCCATCTTTGATAACAACAAGATTTTGATAATGGCAGCTGGAGCGGTTGAAAACATAGTAGAAGTGCTTGAATCAGGGAAGACCATGGAGGCAAGAGAAAATGCAGCCGCAACAATCTTCAGCTTGTCTATGTATGATGAAAACAAAGTAACAATTGGAGCTCATCCAAGGGCCATAAGGGCCTTGGTAAGACTCCTGAGAGAAGGCACTCCTATAGGGAAAAGAGATGCTGCTACTGCACTTGTCAATCTTGCAGTTTACAATCATAACAAGGCAAGCATTGTTAGTGCTGGGGCAGTTCCTTTGCTCATTAAGTTGCTGATGGATGACAAGGCTGGGATAACAGATGATGCATTGGCTGTGCTTGCTTTGCTTCTTGGTTGCTCCCAAGGGTTGGAAGAGATAAAGAATAGTAGAGCATTGGTGTCTCTCCTTATTGATCTTCTGAGATTTGGATCAGCCAAAGGGAAGGAAAACTCAATAACTCTTCTACTCGGGTTGTGCAAAGAAGAAGGTGAGGTTGTTGCAAGGCGTCTCTTGGCGAATCCAAGGAGCATTCCCTCCCTTCAGAGCTTGGCTGCTCATGGTTCTTTGAGGGCTCAAAGAAAGGCTGATGCATTGCTTAGATTGCTCAATAGGTGCTGCTCACAACCTGATCATCATTCTCTATGA 1176 0.4337 MRDPVIVSSGHTYDRIPIAKWINSGHHTCPKSGQRLIHSALIPNYALKSLVQHWCSENKVLVNEPASSLSEVNSSKSNLNLNDADHVYANKASADAVKMTAEFLVGKLATGSVDIQRKAAYKLRLLAKSCTDNRKIIAEAGAIPFLLTLLGSNDPRIQEHAVTALYNLSIFDNNKILIMAAGAVENIVEVLESGKTMEARENAAATIFSLSMYDENKVTIGAHPRAIRALVRLLREGTPIGKRDAATALVNLAVYNHNKASIVSAGAVPLLIKLLMDDKAGITDDALAVLALLLGCSQGLEEIKNSRALVSLLIDLLRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAAHGSLRAQRKADALLRLLNRCCSQPDHHSL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0375 391 PANTHER U BOX DOMAIN-CONTAINING 1 387 - -
Dod04g0375 391 Gene3D - 224 382 IPR011989 -
Dod04g0375 391 Gene3D - 98 223 IPR011989 -
Dod04g0375 391 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 267 IPR000225 GO:0005515
Dod04g0375 391 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 183 IPR000225 GO:0005515
Dod04g0375 391 SMART arm_5 171 212 IPR000225 GO:0005515
Dod04g0375 391 SMART arm_5 255 295 IPR000225 GO:0005515
Dod04g0375 391 SMART arm_5 130 170 IPR000225 GO:0005515
Dod04g0375 391 SMART arm_5 213 254 IPR000225 GO:0005515
Dod04g0375 391 SUPERFAMILY ARM repeat 102 379 IPR016024 -
Dod04g0375 391 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Dod04g0375 391 Pfam Armadillo/beta-catenin-like repeat 131 169 IPR000225 GO:0005515
Dod04g0375 391 Pfam Armadillo/beta-catenin-like repeat 256 291 IPR000225 GO:0005515
Dod04g0375 391 Pfam U-box domain 1 59 IPR003613 GO:0004842|GO:0016567
Dod04g0375 391 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 1 387 - -
Dod04g0375 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Dod04g0375 391 CDD RING-Ubox_PUB 1 34 IPR045210 -
Dod04g0375 391 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Dod04g0375 391 SUPERFAMILY RING/U-box 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0375 Dod-Chr4 4962369 4963544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0375 1 385 U-box Gene Family AT3G46510 47.938 1.67e-100 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0375 - - gmx:100793498 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0375 04 4962369 4963544 Dod04g0375 04 4962369 4963544 ECH