Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0371 ATGTCGGCCCAACACGATTCTCGGACATTAAATTGGCACTACACAGAGCTCGACGACAAGGACCTCGAAATCCGAGGAAGAACACTCTTCTTCATCATCGTACTCTTCTCCATTATCCTCCTCATCACCGTCCTCTTCCTCTACACGCGCTGGGTCTGCCGCTACCATGCCAACAACGCCACCGCCGCAGCCACCGCGTTAGCAGCCCAAGCCAGCCACGCGCCGCCGTCACTGCCGCCGCAGGGGCTGGACCCCGCCTCCATTAAAAAGCTCCCCATCATACTCCACCAGGCGACGCCGGACCCCGAAGGCGGCGCGTGGAAGAATACAGAGTGCTGCATCTGCCTTGGTGAGTTCTCAGACGGCGAGAAGCTGAAGGTTCTTCCGGGTTGTGAGCACTGTTTCCATTGCGATTGCGTTGATATGTGGCTCACGCATCACTCTAGTTGCCCACTTTGCAGGGCTTCTCTTAAGGTTGAATCTTCGTTCCCAAAGATTTTGATTGAGGAACCACCCATTAGAATTGACATCCAGTTCTAG 540 0.5519 MSAQHDSRTLNWHYTELDDKDLEIRGRTLFFIIVLFSIILLITVLFLYTRWVCRYHANNATAAATALAAQASHAPPSLPPQGLDPASIKKLPIILHQATPDPEGGAWKNTECCICLGEFSDGEKLKVLPGCEHCFHCDCVDMWLTHHSSCPLCRASLKVESSFPKILIEEPPIRIDIQF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0371 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 168 IPR044675 -
Dod04g0371 179 Pfam Ring finger domain 111 154 IPR001841 -
Dod04g0371 179 PANTHER RING-H2 FINGER PROTEIN ATL66 3 168 - -
Dod04g0371 179 SUPERFAMILY RING/U-box 105 160 - -
Dod04g0371 179 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Dod04g0371 179 SMART ring_2 112 153 IPR001841 -
Dod04g0371 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0371 Dod-Chr4 4898735 4899274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0371 7 162 C3H Transcription Factor Family AT3G11110 42.949 1.18e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0371 - - aip:107623622 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0371 04 4898735 4899274 Dod08g0676 08 7895176 7895739 PCT