Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0362 ATGGCTTCTTCCATTTCGTCGAGTCCACGCTCTGTTGAAGACATCTTCAAGGACTTCTCCGCTCGACGAACTGCCATCATTCGTGCCCTCACCGATGATGTCGAGGAGTTCTATTCCCTTTGTGATCCGGAGAAAGAGAACTTGTGCTTGTATGGGCACCCCAATGAATCATGGGAGGTTGCTCTGCCGGCGGACGAAGTTCCTTCGGAGCTTCCGGAGCCGGCGTTGGGGATCAATTTCGCTAGAGATGGGATGAATCGTAGAGACTGGCTTTCGTTGGTTGCTGTGCACAGTGATTGCTGGTTGCTCTCTGTGGCATTCTATTTTGGAGCCAGGCTAAATAGGAATGAGAGGAAGCGGCTATTCAGCCTGATGAATGATATGCCAACTCTCTTTGAAGTTGTAACAGGAAGAAAGCCAATAAAAGACAAGTCCACTACAGATAGCGGTGGCAAATCCCGGAGCAGCTCAAAGAGATCAAATGAAGGACCCATCAGAAGCAATTCCAAAGTACTTGATGAAAGTAACGGGGAGGATGAGGAGGAGCATGGTGAAACCCTTTGTGGGAGCTGTGGCGGAAATTACAACTCTGATGAGTTTTGGATTTGTTGTGACATATGTGAGAGATGGTTTCATGGGAAGTGTGTGAAGATCACTCCAGCAAAGGCTGAAAGTATTAAGCAATATAAATGCCCTTCTTGTAACACTAAGAGGGGTAGGCAGTAG 726 0.4766 MASSISSSPRSVEDIFKDFSARRTAIIRALTDDVEEFYSLCDPEKENLCLYGHPNESWEVALPADEVPSELPEPALGINFARDGMNRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLMNDMPTLFEVVTGRKPIKDKSTTDSGGKSRSSSKRSNEGPIRSNSKVLDESNGEDEEEHGETLCGSCGGNYNSDEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCNTKRGRQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0362 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 4 241 - -
Dod04g0362 241 MobiDBLite consensus disorder prediction 150 171 - -
Dod04g0362 241 MobiDBLite consensus disorder prediction 142 178 - -
Dod04g0362 241 CDD PHD_AL_plant 187 237 IPR044104 -
Dod04g0362 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Dod04g0362 241 Pfam Alfin 11 137 IPR021998 GO:0006355|GO:0042393
Dod04g0362 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Dod04g0362 241 SMART PHD_3 187 235 IPR001965 -
Dod04g0362 241 Pfam PHD-finger 188 236 IPR019787 -
Dod04g0362 241 SUPERFAMILY FYVE/PHD zinc finger 177 238 IPR011011 -
Dod04g0362 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Dod04g0362 241 PANTHER CPG BINDING PROTEIN 4 241 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0362 Dod-Chr4 4788926 4791593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0362 6 241 Alfin-like Transcription Factor Family AT5G05610 76.793 2.74e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dod04g0362 Alfin 4.9e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0362 - - zju:107413853 413.69