Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0357 ATGCCGACTCCGACGGCGGATCCGGCCCTTCCTCAGTCCTCCGACCTCCTCCGCCACTCAGACCTCTCCTCCTCCATCTTCAAACCCTACTTCGAGATCACGAGCCGCCACTCCTCGTCCTTGTCCACCGCCACCCCCTCCGACCTCTCAAAGATCCAGTCCTTCCTGACATCCTCATCGTCGGGCGCCCTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCACCGACCCAACATGGTCCTGCTCCTCCCTCTGCTTCGCCCTCTTCCACCTCCCTTGCATCCAGTCCTGGGCCCGCCAATCCTCCCACCTCTCCGCGTCACGCGCCTCCACGCGCCTTCCCATCACCCCCCAAATCGCCTCCGAAACCGCTCTCTGGAACTGCCCCAAATGTAGGGCACACTACCCCACAGCCCACATCCCAAAATCCTACCTTTGCTTCTGCGGCAAACTCGAGAACCCCCCCAATGATCCATGGGTTCTGCCCCATTCCTGCGGCGAAATTTGCGGCAGGCCCTTGAAGCATAATTGCGGGCACCATTGCCTCCTTCTTTGCCACCCTGGACCCTGCCCATCCTGCCCGAAACTCGTCAAAGTTCGATGCTTTTGCGGCTCTGTTGAAGATGTTAGGAGGTGCGGGTTCAAGGAATTCTCTTGTGGGAATGTTTGTGGCAAGTTTTTGGATTGTGGGGTTCACAGGTGTGTTGGTGTTTGCCATGAGGGGCAGTGTCCTCCCTGCAGGGCACGTGGCGTGTACCGGTGCCGGTGTGGGAAGAAGGAGGAGGAGGAGAGGGAGTGCTGTGAGCGTGTGTTTGGGTGTGGGGAGCCGTGTGACAAGAGGCTTGGGTGTGGGAGGCATGTTTGTGAAAGAGGGTGCCATTATGGGGAGTGTGGGGAGTGCCCTCTGCAAGGGAACATGACCTGCCCTTGTGGGAAGAAGGTCTATGAAGGTATGCCTTGTGATGCTGTTGTGCCCTTGTGTGGGGCTACATGTGATAAGATGCTCCGCTGTGGGTACCATAGTTGCCATGAAAGGTGCCACCGCGGCCCGTGTGTTGAGACTTGTAGAATTGTTGTGAGGAAGTCCGTGCCGATGCGGCAGCCTCAAGAAAGATATTTGGCATGTGAAAGGAAGTGCCAGAGGATGCGTGACTGCGGTAGGCATGCTTGTAAACGTCGCTGCTGCGATGGAGATTGCCCTCCATGCTCGGAGGTATGCGACAGGAAGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGTGCCTGTGCTCCTTGTCCAATAATGGTGACAATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGTGGTACGGAAAAGGATCAAAAGCCACCTAAGTGTCCTAAACCATGTCCTATTACTCCTTTATGCTGCCATGCATCAAACCGCAAGCCACACAAATGCCATTACGGAGCTTGCCCTCCTTGTCGGCAACCTTGTGCAGAAGAGTACCCTTGTGGCCATACATGCAAATTAAGGTGTCATGGTGCGAAACCTCCTCCTAATCGAGAGTTTACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGCACTCCTGGGACACCATGCCCTCCTTGTCCAGAACTTGTGTGGAGATCATGTGTTGGACAACACATTGGAGCAGAGAGAATGATGGTTTGCTCTGATAAATCACAGTTCTATTGTGAAAATTTGTGTGGAAATCCTCTATCATGTGGTAATCATTATTGTACTAAAACTTGCCATGCCTTGGACAACTCCACGAACCAGCTAAGGAGAAGTGAGCCATGTGAAGAGTGTTTTCTTCCATGCCAAAAGGAAAGAGAACCTAAATGTGCACATCACTGCCCTCTACCATGCCATCCTGGAGACTGCCCTCCATGCAAAGTGCTTGTTAAACGGTCATGCCACTGTGGCTCAATGGTCCATGCTTTTGAGTGCATATATTACAACAGCTTGTCTGCAAAGGATCAACAGACAGTTCGTTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGTACACATTTATGCCCGGAGACATGTCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCACTGTTCGATGCAAATGCCAAACATTGAAAAAAGAGTGGATATGCCAAGATGTTCAAGCAGCGTATCATGATGATGGATGCCAGCCAAGGGATATTCCCAAAAGTCAATTTGGAATTGGACTCATTCCTTGCAATTCTGAATGCAAGAGTAAAGTGCAGGCTGTTGAGTCAGAGCTACAATTACGTAAATCTAGGGTTACAGAGGTAAAAGAGCCAGATAATGAAAAGTCAGCTCCAAAGCAGGCGAAAAAGGCGACAACGAGTACTAGAATCCAAGGAAACAACAAAACTACAGAAAATTATTTCCAGAACCAAGCAGCTTCTTCTATTTGTCTTTATTTTGGTCATAGTTGTTGCTGCTACATATTATGGGTACAAGGGACTTTTACGGCTCTCTGA 2520 0.5036 MPTPTADPALPQSSDLLRHSDLSSSIFKPYFEITSRHSSSLSTATPSDLSKIQSFLTSSSSGALSCLICLERIKPTDPTWSCSSLCFALFHLPCIQSWARQSSHLSASRASTRLPITPQIASETALWNCPKCRAHYPTAHIPKSYLCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGSVEDVRRCGFKEFSCGNVCGKFLDCGVHRCVGVCHEGQCPPCRARGVYRCRCGKKEEEERECCERVFGCGEPCDKRLGCGRHVCERGCHYGECGECPLQGNMTCPCGKKVYEGMPCDAVVPLCGATCDKMLRCGYHSCHERCHRGPCVETCRIVVRKSVPMRQPQERYLACERKCQRMRDCGRHACKRRCCDGDCPPCSEVCDRKLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEKDQKPPKCPKPCPITPLCCHASNRKPHKCHYGACPPCRQPCAEEYPCGHTCKLRCHGAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRSCVGQHIGAERMMVCSDKSQFYCENLCGNPLSCGNHYCTKTCHALDNSTNQLRRSEPCEECFLPCQKEREPKCAHHCPLPCHPGDCPPCKVLVKRSCHCGSMVHAFECIYYNSLSAKDQQTVRSCGGPCHRKLPNCTHLCPETCHPGECPNPEKCSKKVTVRCKCQTLKKEWICQDVQAAYHDDGCQPRDIPKSQFGIGLIPCNSECKSKVQAVESELQLRKSRVTEVKEPDNEKSAPKQAKKATTSTRIQGNNKTTENYFQNQAASSICLYFGHSCCCYILWVQGTFTAL* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0357 839 MobiDBLite consensus disorder prediction 770 797 - -
Dod04g0357 839 MobiDBLite consensus disorder prediction 770 787 - -
Dod04g0357 839 CDD NF-X1-zinc-finger 376 424 - -
Dod04g0357 839 Pfam NF-X1 type zinc finger 284 302 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 623 638 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 230 248 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 413 431 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 338 357 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 386 404 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 480 490 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 178 195 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 499 508 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 Pfam NF-X1 type zinc finger 581 591 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 14 819 - -
Dod04g0357 839 SMART znfxneu3 499 544 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 284 303 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 386 405 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 230 249 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 621 639 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 470 491 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 338 358 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 178 196 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 581 611 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 684 705 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SMART znfxneu3 413 432 IPR000967 GO:0005634|GO:0008270
Dod04g0357 839 SUPERFAMILY RING/U-box 60 138 - -
Dod04g0357 839 CDD NF-X1-zinc-finger 166 214 - -
Dod04g0357 839 CDD NF-X1-zinc-finger 220 258 - -
Dod04g0357 839 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 14 819 IPR034078 GO:0003700
Dod04g0357 839 CDD NF-X1-zinc-finger 403 451 - -
Dod04g0357 839 CDD NF-X1-zinc-finger 274 321 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Dod04g0357 zf-NF-X1 0.025 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0357 K15683 - gmx:100799540 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0357 04 4682888 4689851 Dod04g0357 04 4682888 4689851 ECH