Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0353 ATGGCATCCCCCAGAGCCACAAGAGCACTGGTTTCGTCGTGCCTGGTATGGCTTTTCCTTCTGTGCGCAACAATTGTGTTCCTTCAGCTTAAGCTTGCAGATAACGCAAGGAACCAAACTTCCTCACAAAACAAGTTCAGTACAACAACAACAACAACAACAACCACAACCCACCGAACTCACCACTCCGTATCTGATGACCCAGATGGAGAAGATTTGGAGGGTGTCACCCACAAAGTGTATTTTGATGTAGAGATCGATGGAAAATTAGCGGGTCGCATAGTCATGGGCCTTTTTGGGAGCACAGTTCCGAAAACAGTAGAAAACTTTCGAGCGCTTTGTACTGGAGAGAAGGGGGTGGGAAGAAGTGGGAGAAAACTTCACTATAAAGGGAGCAGATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGACGAGGTGGAGAATCGATCTATGGTGATAAATTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGACCAGGGTACTTATCGATGGCAAATGCCGGGAAAGATACAAATGGCTCTCAGTTTTTCATCACCACAGTAAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTGCTTTCCGGGATGGACGTTTTGTACAGGATTGAAGCAGAAGGAAGTGATAGTGGCTCACCCAAAAGCAAGGTTGTCATAATAGACAGCGGGGAATCAACTTCATGA 744 0.4651 MASPRATRALVSSCLVWLFLLCATIVFLQLKLADNARNQTSSQNKFSTTTTTTTTTTHRTHHSVSDDPDGEDLEGVTHKVYFDVEIDGKLAGRIVMGLFGSTVPKTVENFRALCTGEKGVGRSGRKLHYKGSRFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANAGKDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYRIEAEGSDSGSPKSKVVIIDSGESTS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0353 247 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 129 146 IPR020892 GO:0003755|GO:0006457
Dod04g0353 247 SUPERFAMILY Cyclophilin-like 76 244 IPR029000 -
Dod04g0353 247 MobiDBLite consensus disorder prediction 39 59 - -
Dod04g0353 247 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 50 244 - -
Dod04g0353 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 204 IPR002130 GO:0000413|GO:0003755
Dod04g0353 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Dod04g0353 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Dod04g0353 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Dod04g0353 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 220 IPR002130 GO:0000413|GO:0003755
Dod04g0353 247 MobiDBLite consensus disorder prediction 39 70 - -
Dod04g0353 247 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 50 244 - -
Dod04g0353 247 MobiDBLite consensus disorder prediction 226 247 - -
Dod04g0353 247 CDD cyclophilin_ABH_like 78 243 - -
Dod04g0353 247 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 242 IPR002130 GO:0000413|GO:0003755
Dod04g0353 247 Gene3D - 68 247 IPR029000 -
Dod04g0353 247 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 81 244 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0353 Dod-Chr4 4637161 4641097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0353 92 242 U-box Gene Family AT5G67530 43.137 3.08e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0353 K01802 - gmx:100792649 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0353 04 4637161 4641097 Dod04g0353 04 4637161 4641097 ECH