Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0335 ATGGCGGCGAGCGATCGCACAGTGTTGCAGTTCTCTTCTTCTTCTTCTTCTTCTTCGTCGCAGAGCTTTTCGGCGAAGGTGCACCCTCTGGTCGTGTTCAACATCTGCGACTGCTATGTTCGGCGCCCCGACCAATCGGAGCGCGTCATCGGAACCCTGCTCGGCTCCGTCCTCCCCGATGGCACCGTCGATATCCGCAACTCCTACGCCGTTCCTCACAATGAGTCCGTCGACCAGGTTGCATTGGATATTGAGTATCAGCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTCATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCATGAATTTTATTCAAGAGAAGTATCCAATCCCATACATTTGACTGTTGATACAGGATTCACAAATGGACAGGGTACTATAAAAGCATATGTTTCAAACAATCTGTCTCTTGGAGACCGGCAGATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGAATGGTTGAAGCTGAGCAAATTGGATTTGATACCCTGAAGTCAACCACTGTTGACAAAATTCCCACTGATTTAGAAGGGATGGAAGTGTCAATGGAACATCTACTAGCTTTGATTGATGACATATACAAATATGTTGATGGTGTTGTGGAGGGACGTGTTGTTCCAGACAACAAAATTGGGAGATTTATTTCAGATGCTGTAGGCTCCCTTCCTAAATTGACCCCAGCAGCTTTTGATAAGCTTGTCAATGACAGCTTGCAGGATCACTTACTCTTGCTATATTTATCTAGCATCACAAGGACACAGCTTAGCTTGGCCGAAAAATTGAACACAGCTGCTCAAATTCTGTGA 873 0.4479 MAASDRTVLQFSSSSSSSSSQSFSAKVHPLVVFNICDCYVRRPDQSERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYQHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVSNPIHLTVDTGFTNGQGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAEQIGFDTLKSTTVDKIPTDLEGMEVSMEHLLALIDDIYKYVDGVVEGRVVPDNKIGRFISDAVGSLPKLTPAAFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0335 290 ProSiteProfiles MPN domain profile. 25 156 IPR037518 -
Dod04g0335 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 8 289 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dod04g0335 290 MobiDBLite consensus disorder prediction 1 21 - -
Dod04g0335 290 Pfam Maintenance of mitochondrial structure and function 177 283 IPR024969 -
Dod04g0335 290 Gene3D Cytidine Deaminase, domain 2 11 191 - -
Dod04g0335 290 SMART pad1_6 24 155 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod04g0335 290 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 25 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod04g0335 290 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 23 286 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dod04g0335 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 8 289 - -
Dod04g0335 290 CDD MPN_eIF3f 26 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0335 Dod-Chr4 4359552 4365236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0335 2 290 Eukaryotic Initiation Factors Gene Family AT2G39990 75.258 1.13e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0335 K03249 - gmx:100811797 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0715 08 8577287 8581001 Dod04g0335 04 4359552 4365236 ECH
Dod04g0335 04 4359552 4365236 Dod04g0335 04 4359552 4365236 ECH