Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0333 ATGGATGTGATAAAGACGCAGCAAATATCATCGAGAGCCATAGAGAAGGTGATAGTTCACCCGCTCGTGTTGCTTAGCATCGTCGATAACTACAACAGAGTCGCCAAGGACACTCGCAAACGCGTCGTTGGCGTCTTGCTCGGCTCCACCTTCAAGGGCACCGTCGACGTCACCAACAGCTACGCAGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCCATGTTTTCTATGTTTAAGAGAATAAACGGTATGAGTTGCTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTTGAACCTAAGGAGCTGGGCATTCCAACGAAAGCATACTATGCAGTTGAAGAGGTTAAAGAGAATGCCACGCAGAAAAGTCAAAAGGTCTTTGTTCATGTGCCATCTGAGATTGCTGCTCACGAGGATGTGTTCAACCTGCTACCAAATCTTAATGTCTCTGATCTGATCAAGGCTTTTGCAGTGAAAACCAATGACATGATGCTGGTAATATATCTCTCATCTCTCATCAGAAGTGTAATTGCGCTCCACAACTTGATTAATAACAAGATGCTCAACAAGGAACATGAGAGAGCTGAAGACTCGAAATCAGTACCTGTACCAAGTGCAGCTTCAAGTTAA 666 0.4369 MDVIKTQQISSRAIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINGMSCYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVPSAASS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0333 221 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 95 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod04g0333 221 Gene3D Cytidine Deaminase, domain 2 9 96 - -
Dod04g0333 221 Gene3D Cytidine Deaminase, domain 2 97 152 - -
Dod04g0333 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 151 219 - -
Dod04g0333 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 94 - -
Dod04g0333 221 Pfam Maintenance of mitochondrial structure and function 145 196 IPR024969 -
Dod04g0333 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 97 150 - -
Dod04g0333 221 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 97 150 - -
Dod04g0333 221 SMART pad1_6 16 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod04g0333 221 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 1 94 - -
Dod04g0333 221 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 151 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0333 Dod-Chr4 4344890 4348378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0333 19 93 Eukaryotic Initiation Factors Gene Family AT2G39990 39.474 7.85e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0333 K03038 - gmx:100790393 274.248