Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0299 ATGGCTTCTCCTTCAGATATCAACCATCTTTCTCACCCTTGTATATATGGGGATTTTGTTTCTTCATATTCAGAGAGGAAATCTGGTTTTATGAAATGGTTAGGCAAGATATTCAACATTGGATCCAATAGAGGAAGGAGTGGTGGTCGTCATCTACAGCAGCCTGCGGAGGAAAACATGGTTTGGCGAGTTCCACCTAGATCCTTGGATGACCGTGGTCGTGCTAGATCAAGATCTTGGAAGGATGAAGAGGATCTGAACCGTGCAATTGCACTTTCTTTAGGTGAAGATTTAAGGAGACCACGTGGAAATAGATGGAGATCAGGCGCTGATGATGATTACACAAAGGCACTTCAGGATCGCATGCACTCCTCTGCACATCCTCCATATGCCCATCCACCTTTTTATCCCCATGGATACAGTTTGCCATCGAATGTCAGAATATGTGGAGGGTGCAATCAGGAGATACTATATGGCAATTGTTTGGGATGGATGGATACTTATTTTCATCCAGATTGCTTTCGTTGTCACTCTTGTCGTCGCCCCATTACTGAACGTGAGTTTTCTTTGTCAGGGAACCTTCCATATCACAAGTCCTGTTTTAAAGAATTGACCCACCCAAAATGTGAAGTTTGCCATCAATACATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCATCCATATTGGTACCAGAAGTATTGTCCATCTCATGAGTATGATAATACAGCTAGATGCTGTAGCTGTGAAAGATTAGAGTCTCGGAATGAAAAATACTATAGATTGGACGATGGACGGATTTTGTGCTTCGAGTGCATGGAATCTGCTATAACGGATACTGGTGAATGCCAGCCTCTTTACCATGCCATCAGAGATTATTATGAAGGAATGAATATGAAAATAGATCAACAAGTTCCCATGCTTCTTGTTGGGAGAGATGCACTTAATGAAGCTATTGTTGGGGAAAAGAATGGTTTCCATCACTTGCCAGAAACAAGGGGCTTGTGCCTTTCAGAAGAGCAGACTGTCACCAGTGTACATAGATGGCCAAGAATGGGAGGCCATCGATTAATAGGGATGAGAACTCAACATCAAAAGCTAAACAGAAGATGTGAAGTTACAGCTATTCTTGTCCTCTATGGTCTTCCTAGGCTACTAACAGGTGCTATCCTTGCTCATGAGTTGATGCACGCTTGGTTACGACTTAGAGGTTACCGCAACCTTGACCCTGGAGTAGAGGAAGGTATCTGTCAGGTTCTCTCACACATGTGGCTTGAGGCAGAAATGGTGTCAGGCTCTACAAACATGCCATCAACATCATCAGCTTCTTCTTCTGCTTCTTCTTCCTCCTCATCATCATCAAAGAAAGGTGCAAGGTCACAAGTTGAGCACAAGTTGGGAGAGTTTTTCATGAACCAGATTGCCAATGACTCTTCCACAGCCTATGGTGATGGCTTTAGATCAGCTATGGAAGCAGTTAATAGGTATGGTTTGCGTTGTACTCTGGAACATATTCGTTTGACTGGTCATTTTCCACTGTAA 1548 0.4309 MASPSDINHLSHPCIYGDFVSSYSERKSGFMKWLGKIFNIGSNRGRSGGRHLQQPAEENMVWRVPPRSLDDRGRARSRSWKDEEDLNRAIALSLGEDLRRPRGNRWRSGADDDYTKALQDRMHSSAHPPYAHPPFYPHGYSLPSNVRICGGCNQEILYGNCLGWMDTYFHPDCFRCHSCRRPITEREFSLSGNLPYHKSCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMKIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRLIGMRTQHQKLNRRCEVTAILVLYGLPRLLTGAILAHELMHAWLRLRGYRNLDPGVEEGICQVLSHMWLEAEMVSGSTNMPSTSSASSSASSSSSSSSKKGARSQVEHKLGEFFMNQIANDSSTAYGDGFRSAMEAVNRYGLRCTLEHIRLTGHFPL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0299 515 MobiDBLite consensus disorder prediction 64 80 - -
Dod04g0299 515 CDD LIM_DA1 149 201 - -
Dod04g0299 515 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 515 - -
Dod04g0299 515 MobiDBLite consensus disorder prediction 437 460 - -
Dod04g0299 515 PANTHER PROTEIN DA1-RELATED 2 20 515 IPR045218 -
Dod04g0299 515 SMART lim_4 148 200 IPR001781 -
Dod04g0299 515 MobiDBLite consensus disorder prediction 44 80 - -
Dod04g0299 515 Pfam LIM domain 149 202 IPR001781 -
Dod04g0299 515 Pfam Protein DA1 298 510 IPR022087 -
Dod04g0299 515 ProSitePatterns LIM zinc-binding domain signature. 149 183 IPR001781 -
Dod04g0299 515 ProSiteProfiles LIM domain profile. 147 207 IPR001781 -
Dod04g0299 515 Gene3D Cysteine Rich Protein 140 206 - -
Dod04g0299 515 MobiDBLite consensus disorder prediction 437 459 - -
Dod04g0299 515 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0299 Dod-Chr4 3709889 3714801 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g0299 DA1-like 6.1e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0299 - - gmx:100798829 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0299 04 3709889 3714801 Dod08g0757 08 9063014 9068274 PCT