Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0296 ATGAAGGCCCTTATTCTTGTCGGAGGATTTGGAACAAGGTTGAGGCCATTGACTCTCAGTGTTCCTAAGCCTCTTGTTGATTTTGCTAACAAACCTATGATTCTGCATCAGATAGAAGCTCTTAAGGCCATTGGAGTCAGTGAAGTGGTACTAGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGATTTTGAAGCAAAGCTTGACATCAAAATCACATGTTCTCAAGAAACTGAGCCATTGGGGACTGCTGGTCCCTTGGCTCTTGCCAGGGATAAGCTGATAGATGACTCTGGAGAACCATTTTTTGTTCTAAACAGTGATGTAATCAGTGAGTACCCACTTAAAGAAATGATCGAATTCCACAAATCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAGACCACTGGACAGGTTGAGAAATTTGTGGAAAAACCGAAGCTATTTGTTGGTAATAAGATCAATGCTGGAATCTACCTTTTGAACCCCTCAGTTTTGGATCAAATTGAACTTAGGCCCACTTCTATTGAGAAAGAGGTGTTTCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTTCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTACATTTCTGGCTTGCGACTCTACTTGGACTCCCTGAGGAAGAAGACTTCTTCTAAGTTGGCCGGTGGTCCTCACATTGTGGGGAATGTCATTGTGGATGAGACTGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCGATTGGTCCTGGCTGTATTATTGAGTCAGGTGTCAGACTCTCACGCTGCACGATAATGAGAGGAGTTCGGATCAGAAACCATGCTTGCATATCCAGCAGCATCATTGGGTGGCATTCGACTGTTGGGCAATGGGCTCGTGTTGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATGCGATGAGATTTACAGCAATGGTGGCGTGGTTTTGCCCCACAAGGAGATCAAGTCAAGCATTCTGAAGCCAGAGATTGTTATGTGA 1086 0.4429 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVSEVVLAINYQPEVMLNFLKDFEAKLDIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDQIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRKKTSSKLAGGPHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIIESGVRLSRCTIMRGVRIRNHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0296 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 291 IPR001451 -
Dod04g0296 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Dod04g0296 361 Gene3D Hexapeptide repeat proteins 237 356 - -
Dod04g0296 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Dod04g0296 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Dod04g0296 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Dod04g0296 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Dod04g0296 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0296 Dod-Chr4 3665520 3669907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0296 1 189 Eukaryotic Initiation Factors Gene Family AT4G18300 23.153 1.06e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0296 K00966 - csin:114292478 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0296 04 3665520 3669907 Dod08g0765 08 9125063 9128077 PCT